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  5. Solyc08g068040.3.1

Solyc08g068040.3.1 (Solyc08g068040)


Aliases : Solyc08g068040

Description : no hits & (original description: none)


Gene families : OG0004684 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004684_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g068040.3.1

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g40990.2 LOC_Os01g40990 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g09059 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp3g19740.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Ore_g43506 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g20419 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g01432 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002240 No alias not classified & original description: CDS=107-7096 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!