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  5. Solyc08g066250.4.1

Solyc08g066250.4.1 (emb1075, Solyc08g066250)


Aliases : emb1075, Solyc08g066250

Description : Histidine decarboxylase OS=Solanum lycopersicum (sp|p54772|dchs_sollc : 801.0)


Gene families : OG0002528 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002528_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g066250.4.1
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00012550 emb1075,... Lipid metabolism.glycerolipid... 0.03 OrthoFinder output from all 47 species
AT1G43710 emb1075 Pyridoxal phosphate (PLP)-dependent transferases... 0.03 OrthoFinder output from all 47 species
Ala_g31163 emb1075 serine decarboxylase & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.05G033900.1 emb1075, Ceric.05G033900 serine decarboxylase & original description:... 0.01 OrthoFinder output from all 47 species
Msp_g32276 emb1075 serine decarboxylase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g06674 emb1075 serine decarboxylase & original description: none 0.04 OrthoFinder output from all 47 species
Solyc07g041260.3.1 emb1075, Solyc07g041260 Histidine decarboxylase OS=Solanum lycopersicum... 0.01 OrthoFinder output from all 47 species
Solyc08g006740.3.1 emb1075, Solyc08g006740 Histidine decarboxylase OS=Solanum lycopersicum... 0.03 OrthoFinder output from all 47 species
Solyc08g006750.4.1 emb1075, Solyc08g006750 Histidine decarboxylase OS=Solanum lycopersicum... 0.03 OrthoFinder output from all 47 species
Spa_g56020 emb1075 serine decarboxylase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016831 carboxy-lyase activity IEA Interproscan
BP GO:0019752 carboxylic acid metabolic process IEA Interproscan
MF GO:0030170 pyridoxal phosphate binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR002129 PyrdxlP-dep_de-COase 114 322
No external refs found!