Solyc08g006740.3.1 (emb1075, Solyc08g006740)

Aliases : emb1075, Solyc08g006740

Description : Histidine decarboxylase OS=Solanum lycopersicum (sp|p54772|dchs_sollc : 603.0)

Gene families : OG0002528 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002528_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc08g006740.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00030p00012550	emb1075,...	Lipid metabolism.glycerolipid...	0.03	OrthoFinder output from all 47 species
AT1G43710	emb1075	Pyridoxal phosphate (PLP)-dependent transferases...	0.04	OrthoFinder output from all 47 species
Aop_g03514	emb1075	serine decarboxylase & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0201.g057543	emb1075	not classified & original description: CDS=202-1482	0.03	OrthoFinder output from all 47 species
Azfi_s0201.g057604	emb1075	not classified & original description: CDS=1-1401	0.03	OrthoFinder output from all 47 species
Dde_g49447	emb1075	serine decarboxylase & original description: none	0.04	OrthoFinder output from all 47 species
LOC_Os04g04640.1	emb1075, LOC_Os04g04640	Serine decarboxylase 3 OS=Oryza sativa subsp. japonica...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005577	emb1075	serine decarboxylase & original description: CDS=84-1601	0.02	OrthoFinder output from all 47 species
Solyc07g041260.3.1	emb1075, Solyc07g041260	Histidine decarboxylase OS=Solanum lycopersicum...	0.02	OrthoFinder output from all 47 species
Solyc08g016770.4.1	emb1075, Solyc08g016770	Histidine decarboxylase OS=Solanum lycopersicum...	0.03	OrthoFinder output from all 47 species
Solyc08g066220.4.1	emb1075, Solyc08g066220	Histidine decarboxylase OS=Solanum lycopersicum...	0.04	OrthoFinder output from all 47 species
Solyc08g066240.3.1	emb1075, Solyc08g066240	Histidine decarboxylase OS=Solanum lycopersicum...	0.05	OrthoFinder output from all 47 species
Solyc08g066250.4.1	emb1075, Solyc08g066250	Histidine decarboxylase OS=Solanum lycopersicum...	0.03	OrthoFinder output from all 47 species
Solyc08g068600.3.1	emb1075, Solyc08g068600	Histidine decarboxylase OS=Solanum lycopersicum...	0.03	OrthoFinder output from all 47 species
Solyc08g068610.3.1	emb1075, Solyc08g068610	Histidine decarboxylase OS=Solanum lycopersicum...	0.09	OrthoFinder output from all 47 species
Solyc08g068640.4.1	emb1075, Solyc08g068640	Histidine decarboxylase OS=Solanum lycopersicum...	0.02	OrthoFinder output from all 47 species
Solyc08g068665.1.1	emb1075, Solyc08g068665	Histidine decarboxylase OS=Solanum lycopersicum...	0.06	OrthoFinder output from all 47 species
Spa_g56020	emb1075	serine decarboxylase & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	IEA	Interproscan
BP	GO:0019752	carboxylic acid metabolic process	IEA	Interproscan
MF	GO:0019842	vitamin binding	None	Extended
MF	GO:0030170	pyridoxal phosphate binding	IEA	Interproscan
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
MF	GO:0070279	vitamin B6 binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0004521	endoribonuclease activity	IEP	HCCA
MF	GO:0004525	ribonuclease III activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
BP	GO:0006887	exocytosis	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
MF	GO:0015035	protein-disulfide reductase activity	IEP	HCCA
MF	GO:0015036	disulfide oxidoreductase activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002129	PyrdxlP-dep_de-COase	171	379

External Links

No external refs found!

Solyc08g006740.3.1 (emb1075, Solyc08g006740)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation