1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc07g065490.3.1

Solyc07g065490.3.1 (Solyc07g065490)


Aliases : Solyc07g065490

Description : no hits & (original description: none)


Gene families : OG0001438 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001438_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g065490.3.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00118220 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AT4G26630 No alias DEK domain-containing chromatin associated protein 0.06 OrthoFinder output from all 47 species
AT5G55660 No alias DEK domain-containing chromatin associated protein 0.05 OrthoFinder output from all 47 species
Adi_g005482 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g021163 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057519 No alias chromatin architectural modulator *(DEK) & original... 0.02 OrthoFinder output from all 47 species
Adi_g114044 No alias chromatin architectural modulator *(DEK) & original... 0.02 OrthoFinder output from all 47 species
Aob_g05123 No alias chromatin architectural modulator *(DEK) & original... 0.03 OrthoFinder output from all 47 species
Cba_g59270 No alias chromatin architectural modulator *(DEK) & original... 0.02 OrthoFinder output from all 47 species
Ceric.1Z004400.1 Ceric.1Z004400 chromatin architectural modulator *(DEK) & original... 0.07 OrthoFinder output from all 47 species
Ceric.20G046000.1 Ceric.20G046000 chromatin architectural modulator *(DEK) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000692.24 No alias No description available 0.03 OrthoFinder output from all 47 species
Dac_g37244 No alias chromatin architectural modulator *(DEK) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g03983 No alias chromatin architectural modulator *(DEK) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g17466 No alias chromatin architectural modulator *(DEK) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g06745 No alias chromatin architectural modulator *(DEK) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os01g70020.1 LOC_Os01g70020 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os03g40010.1 LOC_Os03g40010 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
MA_108165g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g05240 No alias chromatin architectural modulator *(DEK) & original... 0.02 OrthoFinder output from all 47 species
Ore_g08356 No alias chromatin architectural modulator *(DEK) & original... 0.03 OrthoFinder output from all 47 species
Pir_g38019 No alias chromatin architectural modulator *(DEK) & original... 0.02 OrthoFinder output from all 47 species
Sam_g10960 No alias chromatin architectural modulator *(DEK) & original... 0.03 OrthoFinder output from all 47 species
Smo438416 No alias No description available 0.07 OrthoFinder output from all 47 species
Tin_g05087 No alias chromaTin architectural modulator *(DEK) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e004959_P001 Zm00001e004959 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Zm00001e012462_P001 Zm00001e012462 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
Zm00001e018798_P001 Zm00001e018798 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e028422_P002 Zm00001e028422 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR014876 DEK_C 606 659
No external refs found!