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  5. Solyc07g064980.3.1

Solyc07g064980.3.1 (Solyc07g064980)


Aliases : Solyc07g064980

Description : regulatory component VTA1 of VPS4-VTA1 ESCRT-disassembly complex


Gene families : OG0003219 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003219_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g064980.3.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00090p00071890 evm_27.TU.AmTr_v1... Vesicle trafficking.endomembrane trafficking.ESCRT... 0.02 OrthoFinder output from all 47 species
AT4G26750 No alias hydroxyproline-rich glycoprotein family protein 0.03 OrthoFinder output from all 47 species
Azfi_s0020.g015534 No alias regulatory component *(VTA1) of VPS4-VTA1... 0.03 OrthoFinder output from all 47 species
Cre03.g145227 No alias Vesicle trafficking.endomembrane trafficking.ESCRT... 0.02 OrthoFinder output from all 47 species
GSVIVT01037729001 No alias Vesicle trafficking.endomembrane trafficking.ESCRT... 0.05 OrthoFinder output from all 47 species
Gb_39689 No alias regulatory component VTA1 of VPS4-VTA1 ESCRT-disassembly complex 0.04 OrthoFinder output from all 47 species
MA_10429576g0010 No alias regulatory component VTA1 of VPS4-VTA1 ESCRT-disassembly complex 0.02 OrthoFinder output from all 47 species
MA_955549g0010 No alias regulatory component VTA1 of VPS4-VTA1 ESCRT-disassembly complex 0.03 OrthoFinder output from all 47 species
Mp1g06880.1 No alias regulatory component VTA1 of VPS4-VTA1 ESCRT-disassembly complex 0.03 OrthoFinder output from all 47 species
Zm00001e031021_P005 Zm00001e031021 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e036912_P001 Zm00001e036912 regulatory component VTA1 of VPS4-VTA1 ESCRT-disassembly complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP HCCA
CC GO:0000813 ESCRT I complex IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0043085 positive regulation of catalytic activity IEP HCCA
BP GO:0044093 positive regulation of molecular function IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0071985 multivesicular body sorting pathway IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0110154 RNA decapping IEP HCCA
BP GO:0110156 methylguanosine-cap decapping IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR041212 Vta1_C 373 410
IPR039431 Vta1/CALS_N 13 148
No external refs found!