1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc07g064350.3.1

Solyc07g064350.3.1 (Solyc07g064350)


Aliases : Solyc07g064350

Description : no hits & (original description: none)


Gene families : OG0006318 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006318_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g064350.3.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT3G24080 No alias KRR1 family protein 0.08 OrthoFinder output from all 47 species
Aob_g18001 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g31844 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g02723 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.21G041100.1 Ceric.21G041100 not classified & original description: pacid=50602652... 0.03 OrthoFinder output from all 47 species
Cre10.g441450 No alias No description available 0.07 OrthoFinder output from all 47 species
Dac_g15847 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g01575 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os05g41100.1 LOC_Os05g41100 no hits & (original description: none) 0.14 OrthoFinder output from all 47 species
MA_6888g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Smo409885 No alias No description available 0.07 OrthoFinder output from all 47 species
Zm00001e013253_P001 Zm00001e013253 no hits & (original description: none) 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR024626 Kri1-like_C 470 550
IPR018034 Kri1 299 396
No external refs found!