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  5. Solyc07g063900.3.1

Solyc07g063900.3.1 (Solyc07g063900)


Aliases : Solyc07g063900

Description : RNA editing factor (ORRM)


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g063900.3.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
Adi_g021389 GR-RBP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g022151 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g108265 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g09046 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g37833 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g00975 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15568.t1 ATRZ-1A, Aspi01Gene15568 RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene16813.t1 GRP2, ATGRP2,... RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene16822.t1 GRP2, ATGRP2,... RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene35297.t1 GRP2, ATGRP2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13483 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g21776 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os05g13620.1 LOC_Os05g13620 Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba... 0.03 OrthoFinder output from all 47 species
LOC_Os05g13650.1 CCR2, ATGRP7,... no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Lfl_g25551 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g07947 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g30374 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g17831 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c7_6560V3.1 CCR2, ATGRP7,... cold, circadian rhythm, and RNA binding 1 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0045.g013209 CCR2, ATGRP7,... not classified & original description: CDS=144-755 0.02 OrthoFinder output from all 47 species
Solyc09g092320.3.1 GRP2, ATGRP2,... RNA editing factor (ORRM) 0.04 OrthoFinder output from all 47 species
Zm00001e010527_P001 Zm00001e010527 RNA editing factor (ORRM) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004357 glutamate-cysteine ligase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005758 mitochondrial intermembrane space IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006825 copper ion transport IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016530 metallochaperone activity IEP HCCA
MF GO:0016531 copper chaperone activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0031970 organelle envelope lumen IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0042398 cellular modified amino acid biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 48 114
No external refs found!