Solyc07g055920.4.1 (SHP2, AGL5, Solyc07g055920)

Aliases : SHP2, AGL5, Solyc07g055920

Description : transcription factor (MADS/AGL)

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc07g055920.4.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00214260	AGL66,...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
AMTR_s00053p00228660	AGL15,...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
AT1G24260	AGL9, SEP3	K-box region and MADS-box transcription factor family protein	0.03	OrthoFinder output from all 47 species
AT2G42830	SHP2, AGL5	K-box region and MADS-box transcription factor family protein	0.04	OrthoFinder output from all 47 species
AT3G04100	AGL57	AGAMOUS-like 57	0.04	OrthoFinder output from all 47 species
AT3G58780	AGL1, SHP1	K-box region and MADS-box transcription factor family protein	0.03	OrthoFinder output from all 47 species
AT3G66656	AGL91	AGAMOUS-like 91	0.03	OrthoFinder output from all 47 species
Aev_g20345	AGL7, AP1	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g18832	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g20111	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g11010	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene13944.t1	AGL18, Aspi01Gene13944	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene17819.t1	SHP2, AGL5,...	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene63673.t1	STK, AGL11,...	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g38860	STK, AGL11	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g08553	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g23239	AGL10, CAL1, CAL	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g46454	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01006592001	AGL61, DIA	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01008806001	PI	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01012250001	AGL7, AP1	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
GSVIVT01018450001	AGL6	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01019883001	GL19, AGL19	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
Gb_16301	STK, AGL11	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Gb_41550	No alias	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os03g11614.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os06g11330.1	SVP, AGL22,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Len_g06858	AGL16	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_141872g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_175522g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_51624g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
MA_8447039g0010	SOC1, AGL20, ATSOC1	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Nbi_g29018	AGL16	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g16569	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g12246	AGL30	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g22352	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0087.g018504	AGL42	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sam_g15354	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g27719	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc01g106710.1.1	AGL62, Solyc01g106710	component MED19 of head module of MEDIATOR transcription...	0.03	OrthoFinder output from all 47 species
Solyc10g080030.2.1	AGL18, Solyc10g080030	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Spa_g04680	AGL16	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e000846_P003	AGL4, SEP2,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e003667_P001	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e010125_P001	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e012024_P001	AGL4, SEP2,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e016529_P004	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e027034_P001	PI, Zm00001e027034	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e030373_P001	AGL10, CAL1,...	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
Zm00001e034629_P001	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e038716_P004	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0004521	endoribonuclease activity	IEP	HCCA
MF	GO:0004525	ribonuclease III activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	HCCA
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	37	84
IPR002487	TF_Kbox	112	195

External Links

No external refs found!

Solyc07g055920.4.1 (SHP2, AGL5, Solyc07g055920)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation