Solyc07g053610.3.1 (Solyc07g053610)

Aliases : Solyc07g053610

Description : HOX-like transcription factor

Gene families : OG0001590 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001590_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc07g053610.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00058p00137050	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.HB...	0.05	OrthoFinder output from all 47 species
AT5G44180	No alias	Homeodomain-like transcriptional regulator	0.09	OrthoFinder output from all 47 species
Adi_g120339	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g02721	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Als_g14029	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Aob_g21500	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Aspi01Gene48323.t1	HB-1, Aspi01Gene48323	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Aspi01Gene48324.t1	HB-1, Aspi01Gene48324	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Aspi01Gene65117.t1	Aspi01Gene65117	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Azfi_s0575.g078069	HB-1	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Ceric.16G048200.1	HB-1, Ceric.16G048200	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.04	OrthoFinder output from all 47 species
Ceric.38G016400.1	Ceric.38G016400	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.08	OrthoFinder output from all 47 species
Cre03.g174500	No alias	Homeobox-DDT domain protein RLT1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dcu_g48258	HB-1	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Ehy_g16445	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
GSVIVT01020605001	No alias	RNA biosynthesis.transcriptional activation.HB...	0.05	OrthoFinder output from all 47 species
GSVIVT01021113001	HB-1	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
LOC_Os05g48820.1	LOC_Os05g48820	HOX-like transcription factor	0.04	OrthoFinder output from all 47 species
LOC_Os07g42750.1	LOC_Os07g42750	Homeobox-DDT domain protein RLT3 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Lfl_g05044	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Lfl_g10310	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
MA_10432531g0020	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_2434g0010	No alias	HOX-like transcription factor	0.07	OrthoFinder output from all 47 species
Nbi_g01516	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.05	OrthoFinder output from all 47 species
Pir_g65963	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Ppi_g18955	HB-1	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Sam_g25993	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Sam_g39581	No alias	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Smo447019	HB-1	RNA biosynthesis.transcriptional activation.HB...	0.02	OrthoFinder output from all 47 species
Spa_g09105	HB-1	component *(RINGLET/RLT) of ISWI chromatin remodeling...	0.02	OrthoFinder output from all 47 species
Zm00001e020198_P001	HB-1, Zm00001e020198	HOX-like transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e026524_P003	Zm00001e026524	HOX-like transcription factor	0.04	OrthoFinder output from all 47 species
Zm00001e028032_P001	Zm00001e028032	HOX-like transcription factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000123	histone acetyltransferase complex	IEP	HCCA
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	HCCA
MF	GO:0004198	calcium-dependent cysteine-type endopeptidase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0008276	protein methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0010921	regulation of phosphatase activity	IEP	HCCA
MF	GO:0016278	lysine N-methyltransferase activity	IEP	HCCA
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
MF	GO:0018024	histone lysine N-methyltransferase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0019220	regulation of phosphate metabolic process	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0019902	phosphatase binding	IEP	HCCA
MF	GO:0019903	protein phosphatase binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
CC	GO:0031248	protein acetyltransferase complex	IEP	HCCA
BP	GO:0031399	regulation of protein modification process	IEP	HCCA
MF	GO:0031683	G-protein beta/gamma-subunit complex binding	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
BP	GO:0035303	regulation of dephosphorylation	IEP	HCCA
BP	GO:0035304	regulation of protein dephosphorylation	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0042054	histone methyltransferase activity	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051336	regulation of hydrolase activity	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
CC	GO:0070461	SAGA-type complex	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
CC	GO:1902493	acetyltransferase complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR028941	WHIM2_dom	1148	1220
IPR018501	DDT_dom	580	635
IPR007759	Asxl_HARE-HTH	759	827
IPR028942	WHIM1_dom	967	1008
IPR001356	Homeobox_dom	46	100

External Links

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Solyc07g053610.3.1 (Solyc07g053610)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation