1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc07g053300.1.1

Solyc07g053300.1.1 (Solyc07g053300)


Aliases : Solyc07g053300

Description : subfamily ABCG transporter


Gene families : OG0000888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000888_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g053300.1.1
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AT2G13610 No alias ABC-2 type transporter family protein 0.05 OrthoFinder output from all 47 species
AT3G53510 No alias ABC-2 type transporter family protein 0.03 OrthoFinder output from all 47 species
AT5G52860 No alias ABC-2 type transporter family protein 0.05 OrthoFinder output from all 47 species
Aop_g06192 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g36964 No alias subfamily ABCG transporter & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g37274 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene05499.t1 Aspi01Gene05499 subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g03340 No alias subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g23513 No alias subfamily ABCG transporter & original description: none 0.02 OrthoFinder output from all 47 species
Mp5g05620.1 No alias subfamily ABCG transporter 0.04 OrthoFinder output from all 47 species
Msp_g23417 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006110 No alias subfamily ABCG transporter & original description: CDS=1-2232 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023718 No alias not classified & original description: CDS=1-2514 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009607 response to biotic stimulus IEP HCCA
BP GO:0009620 response to fungus IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0043207 response to external biotic stimulus IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0044419 biological process involved in interspecies interaction between organisms IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0050832 defense response to fungus IEP HCCA
BP GO:0051707 response to other organism IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
BP GO:0098542 defense response to other organism IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 50 200
IPR013525 ABC_2_trans 331 542
No external refs found!