Solyc07g005030.4.1 (DCL4, ATDCL4, Solyc07g005030)

Aliases : DCL4, ATDCL4, Solyc07g005030

Description : endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1 siRNA biogenesis regulator complex

Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc07g005030.4.1
Cluster	HCCA: Cluster_33

Target	Alias	Description	ECC score	Gene Family Method
AT1G01040	DCL1, CAF,...	dicer-like 1	0.04	OrthoFinder output from all 47 species
AT3G03300	ATDCL2, DCL2	dicer-like 2	0.03	OrthoFinder output from all 47 species
AT5G20320	DCL4, ATDCL4	dicer-like 4	0.06	OrthoFinder output from all 47 species
Adi_g017408	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.03	OrthoFinder output from all 47 species
Aev_g13800	DCL1, CAF,...	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
Ala_g13307	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.05	OrthoFinder output from all 47 species
Als_g22807	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.04	OrthoFinder output from all 47 species
Aob_g19967	DCL1, CAF,...	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.04	OrthoFinder output from all 47 species
Aop_g06264	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.02	OrthoFinder output from all 47 species
Aop_g31318	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene32281.t1	DCL4, ATDCL4,...	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.05	OrthoFinder output from all 47 species
Ceric.01G108700.1	DCL4, ATDCL4,...	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.03	OrthoFinder output from all 47 species
Ceric.1Z277300.1	DCL1, CAF,...	not classified & original description: pacid=50600427...	0.07	OrthoFinder output from all 47 species
Ceric.22G041000.1	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.05	OrthoFinder output from all 47 species
Dcu_g08330	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.03	OrthoFinder output from all 47 species
Dcu_g13692	DCL1, CAF,...	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.04	OrthoFinder output from all 47 species
Ehy_g18573	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species
GSVIVT01001045001	DCL4, ATDCL4	RNA biosynthesis.siRNA biogenesis.DRB4-DRB7.1 regulator...	0.04	OrthoFinder output from all 47 species
GSVIVT01019052001	ATDCL2, DCL2	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.04	OrthoFinder output from all 47 species
LOC_Os09g14610.1	ATDCL2, DCL2,...	Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species
Lfl_g03508	DCL4, ATDCL4	endoribonuclease (DCL4) of transacting siRNA pathway &...	0.03	OrthoFinder output from all 47 species
Lfl_g06763	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.04	OrthoFinder output from all 47 species
MA_10432726g0010	DCL1, CAF,...	Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp....	0.04	OrthoFinder output from all 47 species
MA_10437243g0020	DCL1, CAF,...	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Mp7g11720.1	DCL4, ATDCL4	endoribonuclease (DCL3). endoribonuclease (DCL4)	0.04	OrthoFinder output from all 47 species
Ore_g16091	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008352	ATDCL3, DCL3	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.04	OrthoFinder output from all 47 species
Smo444049	DCL1, CAF,...	RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease	0.04	OrthoFinder output from all 47 species
Solyc08g067200.2.1	ATDCL3, DCL3,...	Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp....	0.04	OrthoFinder output from all 47 species
Spa_g09097	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEA	Interproscan
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005034	Dicer_dimerisation_dom	569	654
IPR011545	DEAD/DEAH_box_helicase_dom	50	212
IPR001650	Helicase_C	397	503
IPR000999	RNase_III_dom	1021	1151
IPR000999	RNase_III_dom	1227	1336

External Links

No external refs found!

Solyc07g005030.4.1 (DCL4, ATDCL4, Solyc07g005030)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation