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  5. Solyc06g083860.2.1

Solyc06g083860.2.1 (LSH3, Solyc06g083860)


Aliases : LSH3, Solyc06g083860

Description : Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana (sp|o82268|lsh3_arath : 221.0)


Gene families : OG0001118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g083860.2.1
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
AT5G58500 LSH5 Protein of unknown function (DUF640) 0.02 OrthoFinder output from all 47 species
Ala_g01257 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Als_g08697 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene25077.t1 LSH4, Aspi01Gene25077 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dac_g15328 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01023521001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... 0.02 OrthoFinder output from all 47 species
GSVIVT01027827001 LSH10 No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01028348001 LSH3 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.05 OrthoFinder output from all 47 species
Gb_15426 LSH4 Protein G1-like5 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
Gb_36840 LSH4 Protein G1-like6 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species
Gb_39186 No alias Protein G1-like6 OS=Oryza sativa subsp. indica... 0.02 OrthoFinder output from all 47 species
LOC_Os02g07030.1 LSH4, LOC_Os02g07030 Protein G1-like1 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
LOC_Os02g56610.1 LSH4, LOC_Os02g56610 Protein G1-like6 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species
LOC_Os05g28040.1 LSH6, LOC_Os05g28040 Protein G1-like9 OS=Oryza sativa subsp. indica... 0.02 OrthoFinder output from all 47 species
MA_211369g0010 LSH3 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 OrthoFinder output from all 47 species
Solyc07g062470.4.1 LSH10, Solyc07g062470 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.04 OrthoFinder output from all 47 species
Spa_g22798 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Zm00001e004570_P001 LSH4, Zm00001e004570 Protein G1-like4 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species
Zm00001e012687_P001 LSH4, Zm00001e012687 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.02 OrthoFinder output from all 47 species
Zm00001e013711_P001 LSH4, Zm00001e013711 Protein G1-like2 OS=Oryza sativa subsp. indica... 0.04 OrthoFinder output from all 47 species
Zm00001e015143_P001 LSH4, Zm00001e015143 Protein G1-like3 OS=Oryza sativa subsp. indica... 0.06 OrthoFinder output from all 47 species
Zm00001e016177_P002 LSH4, Zm00001e016177 Protein G1-like6 OS=Oryza sativa subsp. indica... 0.04 OrthoFinder output from all 47 species
Zm00001e019403_P001 LSH6, Zm00001e019403 Protein G1-like7 OS=Oryza sativa subsp. indica... 0.02 OrthoFinder output from all 47 species
Zm00001e023022_P001 LSH4, Zm00001e023022 Protein G1-like3 OS=Oryza sativa subsp. indica... 0.04 OrthoFinder output from all 47 species
Zm00001e031512_P001 LSH6, Zm00001e031512 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.04 OrthoFinder output from all 47 species
Zm00001e041238_P001 LSH4, Zm00001e041238 Protein G1-like3 OS=Oryza sativa subsp. indica... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR006936 ALOG_dom 42 164
No external refs found!