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  5. Solyc06g082793.1.1

Solyc06g082793.1.1 (TOM40, Solyc06g082793)


Aliases : TOM40, Solyc06g082793

Description : component Tom40 of outer mitochondrion membrane TOM translocation system


Gene families : OG0002328 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002328_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g082793.1.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00119p00124540 TOM40,... Protein translocation.mitochondrion.outer mitochondrion... 0.02 OrthoFinder output from all 47 species
AT3G20000 TOM40 translocase of the outer mitochondrial membrane 40 0.11 OrthoFinder output from all 47 species
Adi_g082046 TOM40 channel-forming component *(Tom40) of outer... 0.02 OrthoFinder output from all 47 species
Aev_g01304 TOM40 channel-forming component *(Tom40) of outer... 0.03 OrthoFinder output from all 47 species
Ala_g01261 TOM40 channel-forming component *(Tom40) of outer... 0.04 OrthoFinder output from all 47 species
Als_g19212 TOM40 channel-forming component *(Tom40) of outer... 0.03 OrthoFinder output from all 47 species
Aop_g01186 TOM40 channel-forming component *(Tom40) of outer... 0.07 OrthoFinder output from all 47 species
Aop_g32727 TOM40 channel-forming component *(Tom40) of outer... 0.05 OrthoFinder output from all 47 species
Azfi_s0092.g042988 TOM40 channel-forming component *(Tom40) of outer... 0.04 OrthoFinder output from all 47 species
Ceric.22G037300.1 TOM40, Ceric.22G037300 channel-forming component *(Tom40) of outer... 0.03 OrthoFinder output from all 47 species
Cre10.g424450 TOM40 Protein translocation.mitochondrion.outer mitochondrion... 0.03 OrthoFinder output from all 47 species
Dac_g04134 TOM40 channel-forming component *(Tom40) of outer... 0.07 OrthoFinder output from all 47 species
Dac_g36688 TOM40 channel-forming component *(Tom40) of outer... 0.08 OrthoFinder output from all 47 species
Dcu_g11812 TOM40 channel-forming component *(Tom40) of outer... 0.05 OrthoFinder output from all 47 species
GSVIVT01038525001 TOM40 Protein translocation.mitochondrion.outer mitochondrion... 0.09 OrthoFinder output from all 47 species
LOC_Os01g16910.1 TOM40, LOC_Os01g16910 component Tom40 of outer mitochondrion membrane TOM... 0.18 OrthoFinder output from all 47 species
LOC_Os03g20750.1 TOM40, LOC_Os03g20750 component Tom40 of outer mitochondrion membrane TOM... 0.03 OrthoFinder output from all 47 species
Len_g03704 TOM40 channel-forming component *(Tom40) of outer... 0.02 OrthoFinder output from all 47 species
MA_27666g0010 TOM40 component Tom40 of outer mitochondrion membrane TOM... 0.06 OrthoFinder output from all 47 species
Mp3g10590.1 TOM40 component Tom40 of outer mitochondrion membrane TOM... 0.05 OrthoFinder output from all 47 species
Nbi_g00868 TOM40 channel-forming component *(Tom40) of outer... 0.02 OrthoFinder output from all 47 species
Sam_g07859 No alias channel-forming component *(Tom40) of outer... 0.03 OrthoFinder output from all 47 species
Sam_g48816 No alias channel-forming component *(Tom40) of outer... 0.06 OrthoFinder output from all 47 species
Smo403082 TOM40 Protein translocation.mitochondrion.outer mitochondrion... 0.03 OrthoFinder output from all 47 species
Spa_g23679 TOM40 channel-forming component *(Tom40) of outer... 0.02 OrthoFinder output from all 47 species
Spa_g29708 TOM40 channel-forming component *(Tom40) of outer... 0.04 OrthoFinder output from all 47 species
Spa_g48614 TOM40 channel-forming component *(Tom40) of outer... 0.07 OrthoFinder output from all 47 species
Spa_g54862 TOM40 channel-forming component *(Tom40) of outer... 0.09 OrthoFinder output from all 47 species
Tin_g01764 TOM40 channel-forming component *(Tom40) of outer... 0.06 OrthoFinder output from all 47 species
Tin_g02612 TOM40 channel-forming component *(Tom40) of outer... 0.03 OrthoFinder output from all 47 species
Zm00001e025489_P003 TOM40, Zm00001e025489 component Tom40 of outer mitochondrion membrane TOM... 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005741 mitochondrial outer membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036265 RNA (guanine-N7)-methylation IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
BP GO:0070476 rRNA (guanine-N7)-methylation IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR027246 Porin_Euk/Tom40 33 305
No external refs found!