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  5. Solyc06g066320.3.1

Solyc06g066320.3.1 (ATIWS1, IWS1, Solyc06g066320)


Aliases : ATIWS1, IWS1, Solyc06g066320

Description : component IWS1 of SPT6-IWS1 transcription elongation complex


Gene families : OG0004677 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004677_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g066320.3.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Adi_g080516 ATIWS1, IWS1 component *(IWS1) of SPT6-IWS1 transcription elongation... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020610.27 ATIWS1, IWS1 Protein IWS1 homolog 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01011111001 ATIWS1, IWS1 Protein IWS1 homolog 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_01207 ATIWS1, IWS1 component IWS1 of SPT6-IWS1 transcription elongation complex 0.04 OrthoFinder output from all 47 species
LOC_Os01g05420.1 ATIWS1, IWS1,... component IWS1 of SPT6-IWS1 transcription elongation complex 0.05 OrthoFinder output from all 47 species
Msp_g13062 ATIWS1, IWS1 component *(IWS1) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Ore_g27570 ATIWS1, IWS1 component *(IWS1) of SPT6-IWS1 transcription elongation... 0.02 OrthoFinder output from all 47 species
Ppi_g56168 ATIWS1, IWS1 component *(IWS1) of SPT6-IWS1 transcription elongation... 0.02 OrthoFinder output from all 47 species
Zm00001e016922_P001 ATIWS1, IWS1,... component IWS1 of SPT6-IWS1 transcription elongation complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032784 regulation of DNA-templated transcription elongation IEP HCCA
BP GO:0032786 positive regulation of DNA-templated transcription, elongation IEP HCCA
BP GO:0032968 positive regulation of transcription elongation by RNA polymerase II IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034243 regulation of transcription elongation by RNA polymerase II IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR017923 TFIIS_N 345 391
No external refs found!