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  5. Solyc06g063270.4.1

Solyc06g063270.4.1 (RPD1, Solyc06g063270)


Aliases : RPD1, Solyc06g063270

Description : Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana (sp|q689d6|rpd1_arath : 488.0)


Gene families : OG0004302 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004302_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g063270.4.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT1G06440 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.02 OrthoFinder output from all 47 species
Aev_g10206 RPD1 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR021099 PORR_domain 50 385
No external refs found!