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  5. Solyc06g053570.2.1

Solyc06g053570.2.1 (NUA, AtTPR, Solyc06g053570)


Aliases : NUA, AtTPR, Solyc06g053570

Description : NUA nucleoporin of nuclear pore complex


Gene families : OG0003960 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003960_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g053570.2.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00124730 NUA, AtTPR,... Protein translocation.nucleus.nucleocytoplasmic... 0.04 OrthoFinder output from all 47 species
AT1G79280 NUA, AtTPR nuclear pore anchor 0.07 OrthoFinder output from all 47 species
Adi_g039245 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g055513 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.08 OrthoFinder output from all 47 species
Aev_g02612 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.04 OrthoFinder output from all 47 species
Ala_g07174 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.12 OrthoFinder output from all 47 species
Als_g57232 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.04 OrthoFinder output from all 47 species
Aob_g26121 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.07 OrthoFinder output from all 47 species
Aop_g09061 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.05 OrthoFinder output from all 47 species
Aspi01Gene40431.t1 NUA, AtTPR,... nucleoporin of nuclear pore complex *(NUA) & original... 0.04 OrthoFinder output from all 47 species
Cba_g33695 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.02 OrthoFinder output from all 47 species
Ceric.23G046200.1 NUA, AtTPR,... nucleoporin of nuclear pore complex *(NUA) & original... 0.12 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000404.46 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.05 OrthoFinder output from all 47 species
Dcu_g03218 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.05 OrthoFinder output from all 47 species
Dde_g09517 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g15153 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01036698001 NUA, AtTPR Protein translocation.nucleus.nucleocytoplasmic... 0.12 OrthoFinder output from all 47 species
Gb_36757 NUA, AtTPR NUA nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species
LOC_Os02g50790.2 LOC_Os02g50790 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os02g50799.1 NUA, AtTPR,... NUA nucleoporin of nuclear pore complex 0.08 OrthoFinder output from all 47 species
Len_g13910 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.08 OrthoFinder output from all 47 species
Lfl_g03520 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.06 OrthoFinder output from all 47 species
MA_10287420g0010 NUA, AtTPR no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_10435343g0040 NUA, AtTPR NUA nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species
MA_109011g0010 NUA, AtTPR NUA nucleoporin of nuclear pore complex 0.07 OrthoFinder output from all 47 species
MA_113769g0010 NUA, AtTPR no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_33097g0010 NUA, AtTPR Nuclear-pore anchor OS=Arabidopsis thaliana... 0.1 OrthoFinder output from all 47 species
MA_929786g0010 NUA, AtTPR NUA nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Mp2g14600.1 NUA, AtTPR NUA nucleoporin of nuclear pore complex 0.1 OrthoFinder output from all 47 species
Msp_g15712 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.07 OrthoFinder output from all 47 species
Pir_g20507 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.06 OrthoFinder output from all 47 species
Pir_g47948 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g44472 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.06 OrthoFinder output from all 47 species
Smo444132 NUA, AtTPR Protein translocation.nucleus.nucleocytoplasmic... 0.06 OrthoFinder output from all 47 species
Spa_g10543 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.03 OrthoFinder output from all 47 species
Tin_g12694 NUA, AtTPR nucleoporin of nuclear pore complex *(NUA) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e023916_P004 NUA, AtTPR,... NUA nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!