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  5. Solyc06g005670.4.1

Solyc06g005670.4.1 (PUM3, APUM3, Solyc06g005670)


Aliases : PUM3, APUM3, Solyc06g005670

Description : Pumilio homolog 1 OS=Arabidopsis thaliana (sp|q9zw07|pum1_arath : 715.0)


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g005670.4.1
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
Dcu_g48916 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g25330 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g30615 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0136.g022409 APUM2, PUM2 not classified & original description: CDS=679-3840 0.04 OrthoFinder output from all 47 species
Zm00001e021916_P002 APUM6, PUM6,... Pumilio homolog 5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004526 ribonuclease P activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004549 tRNA-specific ribonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR012940 NABP 1 165
IPR001313 Pumilio_RNA-bd_rpt 167 199
IPR001313 Pumilio_RNA-bd_rpt 239 268
IPR001313 Pumilio_RNA-bd_rpt 311 341
IPR001313 Pumilio_RNA-bd_rpt 203 232
IPR001313 Pumilio_RNA-bd_rpt 348 380
IPR001313 Pumilio_RNA-bd_rpt 384 416
IPR001313 Pumilio_RNA-bd_rpt 277 301
IPR001313 Pumilio_RNA-bd_rpt 433 459
No external refs found!