Solyc06g005200.3.1 (Solyc06g005200)

Aliases : Solyc06g005200

Description : component RPP30/POP2 of RNA-dependent RNase P complex

Gene families : OG0006990 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006990_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g005200.3.1

Target	Alias	Description	ECC score	Gene Family Method
AT5G59980	No alias	Polymerase/histidinol phosphatase-like	0.03	OrthoFinder output from all 47 species
Ceric.11G091300.1	Ceric.11G091300	component *(RPP30/POP2) of RNA-dependent RNase P complex...	0.03	OrthoFinder output from all 47 species
Gb_02023	No alias	component RPP30/POP2 of RNA-dependent RNase P complex	0.04	OrthoFinder output from all 47 species
Mp4g18130.1	No alias	component RPP30/POP2 of RNA-dependent RNase P complex	0.05	OrthoFinder output from all 47 species
Sam_g36076	No alias	component *(RPP30/POP2) of RNA-dependent RNase P complex...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004526	ribonuclease P activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0004549	tRNA-specific ribonuclease activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	HCCA
CC	GO:0090730	Las1 complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1902555	endoribonuclease complex	IEP	HCCA
CC	GO:1902911	protein kinase complex	IEP	HCCA
CC	GO:1905348	endonuclease complex	IEP	HCCA
CC	GO:1905354	exoribonuclease complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002738	RNase_P_p30	4	248

External Links

No external refs found!

Solyc06g005200.3.1 (Solyc06g005200)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation