Solyc05g056340.3.1 (Solyc05g056340)

Aliases : Solyc05g056340

Description : associated component HDC1/Rxt3 of histone deacetylase machineries

Gene families : OG0004198 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004198_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc05g056340.3.1
Cluster	HCCA: Cluster_74

Target	Alias	Description	ECC score	Gene Family Method
Adi_g011656	No alias	associated component *(HDC1) of histone deacetylase...	0.02	OrthoFinder output from all 47 species
Aev_g05483	No alias	associated component *(HDC1) of histone deacetylase...	0.04	OrthoFinder output from all 47 species
Aob_g03580	No alias	associated component *(HDC1) of histone deacetylase...	0.02	OrthoFinder output from all 47 species
Aop_g08335	No alias	associated component *(HDC1) of histone deacetylase...	0.02	OrthoFinder output from all 47 species
Cba_g36633	No alias	associated component *(HDC1) of histone deacetylase...	0.02	OrthoFinder output from all 47 species
Ceric.1Z065200.1	Ceric.1Z065200	associated component *(HDC1) of histone deacetylase...	0.11	OrthoFinder output from all 47 species
Cre03.g182600	No alias	Chromatin organisation.histone modifications.histone...	0.02	OrthoFinder output from all 47 species
Dcu_g03126	No alias	associated component *(HDC1) of histone deacetylase...	0.06	OrthoFinder output from all 47 species
GSVIVT01000253001	No alias	Chromatin organisation.histone modifications.histone...	0.07	OrthoFinder output from all 47 species
LOC_Os07g29450.1	LOC_Os07g29450	no hits & (original description: none)	0.15	OrthoFinder output from all 47 species
Len_g03346	No alias	associated component *(HDC1) of histone deacetylase...	0.03	OrthoFinder output from all 47 species
Lfl_g10369	No alias	associated component *(HDC1) of histone deacetylase...	0.04	OrthoFinder output from all 47 species
MA_18046g0020	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_18805g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_79402g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp3g12140.1	No alias	associated component HDC1/Rxt3 of histone deacetylase machineries	0.05	OrthoFinder output from all 47 species
Msp_g25492	No alias	associated component *(HDC1) of histone deacetylase...	0.02	OrthoFinder output from all 47 species
Nbi_g03166	No alias	associated component *(HDC1) of histone deacetylase...	0.03	OrthoFinder output from all 47 species
Ppi_g03202	No alias	associated component *(HDC1) of histone deacetylase...	0.04	OrthoFinder output from all 47 species
Sam_g36521	No alias	associated component *(HDC1) of histone deacetylase...	0.08	OrthoFinder output from all 47 species
Tin_g13819	No alias	associated component *(HDC1) of histone deacetylase...	0.04	OrthoFinder output from all 47 species
Zm00001e010714_P003	Zm00001e010714	associated component HDC1/Rxt3 of histone deacetylase machineries	0.08	OrthoFinder output from all 47 species
Zm00001e022328_P001	Zm00001e022328	associated component HDC1/Rxt3 of histone deacetylase machineries	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006476	protein deacetylation	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016575	histone deacetylation	IEA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0035601	protein deacylation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0098732	macromolecule deacylation	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013951	Rxt3	493	537

External Links

No external refs found!

Solyc05g056340.3.1 (Solyc05g056340)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation