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  5. Solyc05g051260.3.1

Solyc05g051260.3.1 (Solyc05g051260)


Aliases : Solyc05g051260

Description : no description available(sp|q84wt5|xyn5l_arath : 344.0)


Gene families : OG0001478 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001478_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g051260.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00086p00056140 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT2G14690 No alias Glycosyl hydrolase superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G08160 No alias glycosyl hydrolase family 10 protein /... 0.03 OrthoFinder output from all 47 species
AT4G33810 No alias Glycosyl hydrolase superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G33820 No alias Glycosyl hydrolase superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g007681 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036837 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g086595 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g25978 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g10327 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.30G035800.1 Ceric.30G035800 not classified & original description: pacid=50607993... 0.03 OrthoFinder output from all 47 species
Ceric.30G036100.1 Ceric.30G036100 not classified & original description: pacid=50608372... 0.04 OrthoFinder output from all 47 species
Dcu_g11065 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01037825001 No alias No description available 0.06 OrthoFinder output from all 47 species
GSVIVT01037832001 No alias No description available 0.06 OrthoFinder output from all 47 species
GSVIVT01037833001 No alias No description available 0.06 OrthoFinder output from all 47 species
Gb_02219 No alias no description available(sp|q84wt5|xyn5l_arath : 355.0) 0.05 OrthoFinder output from all 47 species
LOC_Os01g04290.1 LOC_Os01g04290 endo-beta-1,4-xylanase 0.04 OrthoFinder output from all 47 species
LOC_Os01g04300.1 ATXYN1, RXF12,... endo-beta-1,4-xylanase 0.05 OrthoFinder output from all 47 species
LOC_Os03g10478.1 LOC_Os03g10478 no description available(sp|q84wt5|xyn5l_arath : 394.0) 0.05 OrthoFinder output from all 47 species
LOC_Os03g14010.1 LOC_Os03g14010 no description available(sp|q84wt5|xyn5l_arath : 305.0) 0.03 OrthoFinder output from all 47 species
LOC_Os05g23350.1 LOC_Os05g23350 endo-beta-1,4-xylanase 0.03 OrthoFinder output from all 47 species
LOC_Os07g27320.1 LOC_Os07g27320 endo-beta-1,4-xylanase 0.01 OrthoFinder output from all 47 species
MA_10434167g0010 No alias no description available(sp|a0a1p8awh8|xyn1_arath : 102.0) 0.01 OrthoFinder output from all 47 species
Mp6g05510.1 ATXYN1, RXF12 endo-beta-1,4-xylanase 0.02 OrthoFinder output from all 47 species
Msp_g31883 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo420481 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc01g105500.4.1 Solyc01g105500 no description available(sp|a0a1p8b8f8|xyn5_arath : 393.0) 0.04 OrthoFinder output from all 47 species
Solyc04g077190.4.1 ATXYN1, RXF12,... endo-beta-1,4-xylanase 0.04 OrthoFinder output from all 47 species
Solyc10g055370.2.1 Solyc10g055370 no description available(sp|a0a1p8b8f8|xyn5_arath : 301.0) 0.04 OrthoFinder output from all 47 species
Solyc11g043160.2.1 Solyc11g043160 no description available(sp|q84wt5|xyn5l_arath : 375.0) 0.01 OrthoFinder output from all 47 species
Zm00001e000757_P001 Zm00001e000757 no description available(sp|q84wt5|xyn5l_arath : 397.0) 0.03 OrthoFinder output from all 47 species
Zm00001e012296_P001 ATXYN1, RXF12,... endo-beta-1,4-xylanase 0.02 OrthoFinder output from all 47 species
Zm00001e016992_P001 ATXYN1, RXF12,... endo-beta-1,4-xylanase 0.05 OrthoFinder output from all 47 species
Zm00001e038773_P006 Zm00001e038773 no description available(sp|q84wt5|xyn5l_arath : 388.0) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019566 arabinose metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0046373 L-arabinose metabolic process IEP HCCA
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003305 CenC_carb-bd 53 156
IPR001000 GH10_dom 230 485
No external refs found!