Solyc05g048850.4.1 (RH8, ATRH8, Solyc05g048850)

Aliases : RH8, ATRH8, Solyc05g048850

Description : DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp. japonica (sp|q6h7s2|rh8_orysj : 768.0)

Gene families : OG0001822 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001822_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc05g048850.4.1
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
AT4G00660	RH8, ATRH8	RNAhelicase-like 8	0.03	OrthoFinder output from all 47 species
LOC_Os04g45040.3	RH8, ATRH8,...	DEAD-box ATP-dependent RNA helicase 6 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Lfl_g02022	RH8, ATRH8	DDX6-type mRNA helicase *(RH12/RH8) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g18112	No alias	DDX6-type mRNA helicase *(RH12/RH8) & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e004416_P001	RH8, ATRH8,...	DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Zm00001e012585_P001	RH8, ATRH8,...	DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	HCCA
MF	GO:0005049	nuclear export signal receptor activity	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
MF	GO:0008175	tRNA methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0043015	gamma-tubulin binding	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	388	495
IPR011545	DEAD/DEAH_box_helicase_dom	188	351

External Links

No external refs found!