1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc05g021100.2.1

Solyc05g021100.2.1 (Solyc05g021100)


Aliases : Solyc05g021100

Description : RopGEF guanine nucleotide exchange factor (SWAP70)


Gene families : OG0002746 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002746_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g021100.2.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Aop_g19717 No alias RopGEF guanine nucleotide exchange factor *(SWAP70) &... 0.02 OrthoFinder output from all 47 species
Dcu_g33141 No alias RopGEF guanine nucleotide exchange factor *(SWAP70) &... 0.04 OrthoFinder output from all 47 species
Sam_g14632 No alias RopGEF guanine nucleotide exchange factor *(SWAP70) &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP HCCA
CC GO:0000445 THO complex part of transcription export complex IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!