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  5. Solyc05g018490.3.1

Solyc05g018490.3.1 (Solyc05g018490)


Aliases : Solyc05g018490

Description : no hits & (original description: none)


Gene families : OG0001835 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001835_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g018490.3.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AT2G25670 No alias BEST Arabidopsis thaliana protein match is: copper ion... 0.04 OrthoFinder output from all 47 species
AT4G32610 No alias copper ion binding 0.04 OrthoFinder output from all 47 species
Ore_g08842 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo232461 No alias No description available 0.02 OrthoFinder output from all 47 species
Spa_g07750 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!