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  5. Solyc05g018350.4.1

Solyc05g018350.4.1 (Solyc05g018350)


Aliases : Solyc05g018350

Description : transcription factor (Trihelix)


Gene families : OG0000970 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000970_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g018350.4.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT3G24490 No alias Alcohol dehydrogenase transcription factor Myb/SANT-like... 0.09 OrthoFinder output from all 47 species
Gb_29508 No alias transcription factor (Trihelix) 0.02 OrthoFinder output from all 47 species
LOC_Os01g52090.1 LOC_Os01g52090 transcription factor (Trihelix) 0.04 OrthoFinder output from all 47 species
Mp7g06290.1 No alias transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
Mp7g12800.1 No alias transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species
Ore_g12684 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g31055 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA

No InterPro domains available for this sequence

No external refs found!