Solyc05g015040.4.1 (Solyc05g015040)

Aliases : Solyc05g015040

Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 OS=Arabidopsis thaliana (sp|q93y16|deah4_arath : 1013.0)

Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc05g015040.4.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00090p00083520	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.spliceosome...	0.04	OrthoFinder output from all 47 species
AT1G26370	No alias	RNA helicase family protein	0.05	OrthoFinder output from all 47 species
AT4G18465	No alias	RNA helicase family protein	0.03	OrthoFinder output from all 47 species
Adi_g014958	EMB3011	RNA helicase *(Prp16) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g045408	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g060167	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g107993	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g11422	No alias	RNA helicase *(Prp22) & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g38553	EMB3011	RNA helicase *(Prp16) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g29988	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g01347	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene64069.t1	EMB3011, Aspi01Gene64069	RNA helicase *(Prp16) & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.04G078700.1	Ceric.04G078700	not classified & original description: pacid=50630845...	0.04	OrthoFinder output from all 47 species
Ceric.15G036900.1	Ceric.15G036900	RNA helicase *(Prp22) & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.25G032700.1	Ceric.25G032700	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.03	OrthoFinder output from all 47 species
Ceric.34G065000.1	Ceric.34G065000	not classified & original description: pacid=50623415...	0.03	OrthoFinder output from all 47 species
Ceric.37G064800.1	ESP3, EMB2733,...	RNA helicase *(Prp2) & original description:...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000984.27	ESP3, EMB2733	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00022075.25	No alias	RNA processing.RNA splicing.spliceosome...	0.01	OrthoFinder output from all 47 species
Cre07.g349100	ESP3, EMB2733	RNA processing.RNA splicing.spliceosome...	0.03	OrthoFinder output from all 47 species
Dcu_g13368	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g07449	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g22606	EMB3011	RNA helicase *(Prp16) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g25246	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01028153001	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species
GSVIVT01029863001	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.04	OrthoFinder output from all 47 species
Gb_14269	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species
Gb_14270	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species
Gb_30670	No alias	helicase Prp43 of Intron-Lariat Spliceosome complex	0.03	OrthoFinder output from all 47 species
LOC_Os01g11370.1	LOC_Os01g11370	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.04	OrthoFinder output from all 47 species
LOC_Os06g09280.1	LOC_Os06g09280	RNA helicase (Prp22)	0.03	OrthoFinder output from all 47 species
LOC_Os11g20554.1	LOC_Os11g20554	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.04	OrthoFinder output from all 47 species
Len_g09738	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.02	OrthoFinder output from all 47 species
MA_10428112g0030	FAS4, ATFAS4	ATP-dependent RNA helicase DEAH13 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_10430150g0010	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species
MA_4084g0010	HVT1, ATVT-1	DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_5383g0010	EMB3011	RNA helicase (Prp16)	0.03	OrthoFinder output from all 47 species
MA_8723931g0010	EMB3011	RNA helicase (Prp16)	0.05	OrthoFinder output from all 47 species
Mp1g21130.1	No alias	helicase Prp43 of Intron-Lariat Spliceosome complex	0.02	OrthoFinder output from all 47 species
Mp3g17320.1	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species
Mp4g02780.1	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species
Mp4g16380.1	ESP3, EMB2733	RNA helicase (Prp2)	0.04	OrthoFinder output from all 47 species
Mp7g03460.1	EMB3011	RNA helicase (Prp16)	0.03	OrthoFinder output from all 47 species
Msp_g13247	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g14081	EMB3011	RNA helicase *(Prp16) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g21732	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g18506	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g17516	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g06275	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g16290	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g17882	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g28400	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e001487_P003	Zm00001e001487	helicase Prp43 of Intron-Lariat Spliceosome complex	0.03	OrthoFinder output from all 47 species
Zm00001e014112_P001	Zm00001e014112	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.04	OrthoFinder output from all 47 species
Zm00001e016478_P002	Zm00001e016478	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.04	OrthoFinder output from all 47 species
Zm00001e028404_P001	Zm00001e028404	RNA helicase (Prp22)	0.04	OrthoFinder output from all 47 species
Zm00001e038305_P001	Zm00001e038305	helicase Prp43 of Intron-Lariat Spliceosome complex	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006623	protein targeting to vacuole	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007034	vacuolar transport	IEP	HCCA
BP	GO:0007062	sister chromatid cohesion	IEP	HCCA
BP	GO:0007064	mitotic sister chromatid cohesion	IEP	HCCA
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	HCCA
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	HCCA
MF	GO:0015299	obsolete solute:proton antiporter activity	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	HCCA
CC	GO:0018995	host cellular component	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0030832	regulation of actin filament length	IEP	HCCA
BP	GO:0030833	regulation of actin filament polymerization	IEP	HCCA
BP	GO:0032271	regulation of protein polymerization	IEP	HCCA
BP	GO:0032535	regulation of cellular component size	IEP	HCCA
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	HCCA
BP	GO:0032970	regulation of actin filament-based process	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
CC	GO:0033643	host cell part	IEP	HCCA
CC	GO:0033646	host intracellular part	IEP	HCCA
CC	GO:0033647	host intracellular organelle	IEP	HCCA
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	HCCA
CC	GO:0042025	host cell nucleus	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043254	regulation of protein-containing complex assembly	IEP	HCCA
BP	GO:0044087	regulation of cellular component biogenesis	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051493	regulation of cytoskeleton organization	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0065008	regulation of biological quality	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072665	protein localization to vacuole	IEP	HCCA
BP	GO:0072666	establishment of protein localization to vacuole	IEP	HCCA
BP	GO:0090066	regulation of anatomical structure size	IEP	HCCA
BP	GO:0110053	regulation of actin filament organization	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	208	335
IPR007502	Helicase-assoc_dom	400	482
IPR011545	DEAD/DEAH_box_helicase_dom	12	165
IPR011709	DEAD-box_helicase_OB_fold	559	639

External Links

No external refs found!

Solyc05g015040.4.1 (Solyc05g015040)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation