1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc05g007895.1.1

Solyc05g007895.1.1 (Solyc05g007895)


Aliases : Solyc05g007895

Description : E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis thaliana (sp|q9lqx2|mpsr1_arath : 119.0)


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g007895.1.1
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AT1G14200 No alias RING/U-box superfamily protein 0.17 OrthoFinder output from all 47 species
AT1G55530 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G40830 RHC1A RING-H2 finger C1A 0.01 OrthoFinder output from all 47 species
AT3G10815 No alias RING/U-box superfamily protein 0.06 OrthoFinder output from all 47 species
Adi_g012553 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Adi_g019630 ATCRT1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g020451 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g066616 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Adi_g085324 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Adi_g103586 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g04888 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g08904 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14925 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g22643 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g03081 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene15225.t1 Aspi01Gene15225 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene16608.t1 RHC1A, Aspi01Gene16608 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0038.g026224 No alias not classified & original description: CDS=1-687 0.03 OrthoFinder output from all 47 species
Azfi_s0230.g059174 No alias not classified & original description: CDS=1-867 0.03 OrthoFinder output from all 47 species
Cba_g03836 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Ceric.06G020800.1 Ceric.06G020800 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.25 OrthoFinder output from all 47 species
Ceric.06G020900.1 Ceric.06G020900 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Dac_g13479 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Dde_g26594 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Ehy_g23378 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os06g01200.1 LOC_Os06g01200 E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 OrthoFinder output from all 47 species
LOC_Os07g43740.1 LOC_Os07g43740 no hits & (original description: none) 0.22 OrthoFinder output from all 47 species
Len_g16162 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Len_g22017 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g30265 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g31373 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g40832 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp7g15970.1 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g25713 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g25986 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g36158 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g36482 ATCRT1 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pnu_g26717 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g00999 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012146 No alias not classified & original description: CDS=1-969 0.01 OrthoFinder output from all 47 species
Smo18753 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Spa_g09700 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.06 OrthoFinder output from all 47 species
Spa_g20368 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g26018 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g00982 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e010857_P001 Zm00001e010857 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e011788_P002 Zm00001e011788 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Zm00001e024003_P001 Zm00001e024003 E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 46 88
No external refs found!