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  5. Solyc05g006070.4.1

Solyc05g006070.4.1 (Solyc05g006070)


Aliases : Solyc05g006070

Description : HPE1 plastidial RNA splicing factor


Gene families : OG0007581 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007581_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc05g006070.4.1
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00088p00132770 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
AT1G70200 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.13 OrthoFinder output from all 47 species
Aop_g13535 No alias plastidial RNA splicing factor *(HPE1) & original... 0.02 OrthoFinder output from all 47 species
Ceric.04G006400.1 Ceric.04G006400 plastidial RNA splicing factor *(HPE1) & original... 0.06 OrthoFinder output from all 47 species
Dcu_g11586 No alias plastidial RNA splicing factor *(HPE1) & original... 0.03 OrthoFinder output from all 47 species
Dde_g26366 No alias plastidial RNA splicing factor *(HPE1) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g01458 No alias plastidial RNA splicing factor *(HPE1) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01020168001 No alias RNA processing.organelle machineries.RNA... 0.15 OrthoFinder output from all 47 species
LOC_Os02g22070.1 LOC_Os02g22070 HPE1 plastidial RNA splicing factor 0.07 OrthoFinder output from all 47 species
MA_10435608g0010 No alias HPE1 plastidial RNA splicing factor 0.08 OrthoFinder output from all 47 species
Mp1g21620.1 No alias HPE1 plastidial RNA splicing factor 0.14 OrthoFinder output from all 47 species
Msp_g01582 No alias plastidial RNA splicing factor *(HPE1) & original... 0.02 OrthoFinder output from all 47 species
Nbi_g24330 No alias plastidial RNA splicing factor *(HPE1) & original... 0.03 OrthoFinder output from all 47 species
Ore_g06305 No alias plastidial RNA splicing factor *(HPE1) & original... 0.02 OrthoFinder output from all 47 species
Sam_g15062 No alias plastidial RNA splicing factor *(HPE1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g40721 No alias plastidial RNA splicing factor *(HPE1) & original... 0.03 OrthoFinder output from all 47 species
Smo442087 No alias RNA processing.organelle machineries.RNA... 0.06 OrthoFinder output from all 47 species
Spa_g30782 No alias plastidial RNA splicing factor *(HPE1) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e013842_P001 Zm00001e013842 HPE1 plastidial RNA splicing factor 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 186 251
No external refs found!