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  5. Solyc04g079560.3.1

Solyc04g079560.3.1 (Solyc04g079560)


Aliases : Solyc04g079560

Description : amino acid transporter (LHT)


Gene families : OG0003545 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003545_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g079560.3.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
Ala_g22816 No alias amino acid transporter *(LHT) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g11976 No alias amino acid transporter *(LHT) & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.29G076600.1 Ceric.29G076600 amino acid transporter *(LHT) & original description:... 0.03 OrthoFinder output from all 47 species
Ehy_g25614 No alias amino acid transporter *(LHT) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g27316 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01023906001 No alias Solute transport.carrier-mediated transport.APC... 0.03 OrthoFinder output from all 47 species
LOC_Os12g30040.1 LOC_Os12g30040 amino acid transporter (LHT) 0.08 OrthoFinder output from all 47 species
MA_10435459g0010 No alias Lysine histidine transporter-like 8 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g10182 No alias amino acid transporter *(LHT) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g11797 No alias amino acid transporter *(LHT) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29558 No alias amino acid transporter *(LHT) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g10277 No alias amino acid transporter *(LHT) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22641 No alias amino acid transporter *(LHT) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e017771_P001 Zm00001e017771 amino acid transporter (LHT) 0.06 OrthoFinder output from all 47 species
Zm00001e041487_P001 Zm00001e041487 amino acid transporter (LHT) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR013057 AA_transpt_TM 102 513
No external refs found!