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  5. Solyc04g017710.3.1

Solyc04g017710.3.1 (Solyc04g017710)


Aliases : Solyc04g017710

Description : C3H zinc finger transcription factor. component MAC5 of non-snRNP MOS4-associated complex


Gene families : OG0002868 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002868_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g017710.3.1
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00207950 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Adi_g010334 No alias component *(MAC5) of non-snRNP MOS4-associated complex &... 0.02 OrthoFinder output from all 47 species
Aev_g07822 No alias component *(MAC5) of non-snRNP MOS4-associated complex &... 0.02 OrthoFinder output from all 47 species
Als_g59176 No alias component *(MAC5) of non-snRNP MOS4-associated complex &... 0.03 OrthoFinder output from all 47 species
Aob_g03209 No alias component *(MAC5) of non-snRNP MOS4-associated complex &... 0.05 OrthoFinder output from all 47 species
Cba_g01090 No alias component *(MAC5) of non-snRNP MOS4-associated complex &... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021537.17 No alias RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder output from all 47 species
Dde_g14759 No alias component *(MAC5) of non-snRNP MOS4-associated complex &... 0.04 OrthoFinder output from all 47 species
Gb_38162 No alias C3H zinc finger transcription factor. component MAC5 of... 0.02 OrthoFinder output from all 47 species
LOC_Os06g07350.1 LOC_Os06g07350 C3H zinc finger transcription factor. component MAC5 of... 0.05 OrthoFinder output from all 47 species
LOC_Os07g18050.1 LOC_Os07g18050 C3H zinc finger transcription factor. component MAC5 of... 0.03 OrthoFinder output from all 47 species
Nbi_g14693 No alias component *(MAC5) of non-snRNP MOS4-associated complex &... 0.02 OrthoFinder output from all 47 species
Sam_g07647 No alias component *(MAC5) of non-snRNP MOS4-associated complex &... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR032297 Torus 148 194
IPR000504 RRM_dom 230 288
No external refs found!