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  5. Solyc04g016410.3.1

Solyc04g016410.3.1 (TPR16, Solyc04g016410)


Aliases : TPR16, Solyc04g016410

Description : TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis thaliana (sp|q84jr9|ttl4_arath : 103.0)


Gene families : OG0001935 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001935_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g016410.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00201040 TPR16,... DnaJ protein P58IPK homolog OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AT2G41520 TPR15 Heat shock protein DnaJ with tetratricopeptide repeat 0.05 OrthoFinder output from all 47 species
AT5G12430 TPR16 Heat shock protein DnaJ with tetratricopeptide repeat 0.06 OrthoFinder output from all 47 species
Adi_g020200 TPR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069297 TPR16 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g087219 TPR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087246 TPR16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g35461 TPR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12835 TPR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g13510 TPR16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.31G035700.1 TPR16, Ceric.31G035700 not classified & original description: pacid=50573879... 0.06 OrthoFinder output from all 47 species
Cre02.g108800 TPR16 No description available 0.02 OrthoFinder output from all 47 species
Dcu_g12352 TPR16 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g04463 TPR16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02947 TPR16 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g15691 TPR16 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01005044001 TPR16 TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis thaliana 0.09 OrthoFinder output from all 47 species
LOC_Os05g31056.1 TPR16, LOC_Os05g31056 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
LOC_Os05g31062.1 TPR16, LOC_Os05g31062 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_7383g0010 TPR16 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp3g16220.1 TPR16 TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Nbi_g03217 TPR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g05014 TPR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02425 TPR16 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010692 TPR16 not classified & original description: CDS=84-4754 0.02 OrthoFinder output from all 47 species
Sam_g36194 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g09929 TPR16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e026765_P001 Zm00001e026765 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e031378_P001 TPR16, Zm00001e031378 TPR repeat-containing thioredoxin TTL2 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001623 DnaJ_domain 1268 1351
No external refs found!