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  5. Solyc04g015830.3.1

Solyc04g015830.3.1 (ATVLN2, VLN2, Solyc04g015830)


Aliases : ATVLN2, VLN2, Solyc04g015830

Description : villin actin-crosslinking factor


Gene families : OG0000479 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000479_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g015830.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00248490 ATVLN2, VLN2,... Cytoskeleton.microfilament network.actin... 0.03 OrthoFinder output from all 47 species
AT2G41740 ATVLN2, VLN2 villin 2 0.06 OrthoFinder output from all 47 species
AT4G30160 VLN4, ATVLN4 villin 4 0.06 OrthoFinder output from all 47 species
Aev_g02570 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g12597 ATVLN2, VLN2 villin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g12394 ATVLN2, VLN2 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g20997 ATVLN2, VLN2 villin actin-crosslinking factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g40168 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene30356.t1 VLN4, ATVLN4,... villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0277.g061478 ATVLN3, VLN3 villin actin-crosslinking factor & original description:... 0.06 OrthoFinder output from all 47 species
Cba_g25933 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G056400.1 ATVLN3, VLN3,... villin actin-crosslinking factor & original description:... 0.02 OrthoFinder output from all 47 species
Cre12.g524400 VLN4, ATVLN4 No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01029237001 VLN4, ATVLN4 Cytoskeleton.microfilament network.actin... 0.09 OrthoFinder output from all 47 species
GSVIVT01033261001 ATVLN2, VLN2 Cytoskeleton.microfilament network.actin... 0.06 OrthoFinder output from all 47 species
Gb_23115 VLN4, ATVLN4 villin actin-crosslinking factor 0.04 OrthoFinder output from all 47 species
Gb_25295 VLN4, ATVLN4 villin actin-crosslinking factor 0.05 OrthoFinder output from all 47 species
LOC_Os04g51440.1 VLN4, ATVLN4,... villin actin-crosslinking factor 0.03 OrthoFinder output from all 47 species
LOC_Os06g44890.1 VLN4, ATVLN4,... villin actin-crosslinking factor 0.02 OrthoFinder output from all 47 species
Lfl_g07820 ATVLN2, VLN2 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Mp1g24640.1 ATVLN3, VLN3 villin actin-crosslinking factor 0.05 OrthoFinder output from all 47 species
Mp7g09750.1 ATVLN2, VLN2 villin actin-crosslinking factor 0.03 OrthoFinder output from all 47 species
Nbi_g12930 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g05024 ATVLN2, VLN2 villin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g06575 VLN4, ATVLN4 villin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g10560 No alias villin actin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc10g080100.3.1 ATVLN2, VLN2,... villin actin-crosslinking factor 0.03 OrthoFinder output from all 47 species
Tin_g03521 VLN4, ATVLN4 villin acTin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g15028 ATVLN3, VLN3 villin acTin-crosslinking factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e010507_P006 VLN4, ATVLN4,... villin actin-crosslinking factor 0.1 OrthoFinder output from all 47 species
Zm00001e028314_P001 ATVLN2, VLN2,... villin actin-crosslinking factor 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEA Interproscan
BP GO:0007010 cytoskeleton organization IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR007123 Gelsolin-like_dom 29 111
IPR007123 Gelsolin-like_dom 149 217
IPR007123 Gelsolin-like_dom 635 710
IPR007123 Gelsolin-like_dom 403 482
IPR007123 Gelsolin-like_dom 265 337
IPR007123 Gelsolin-like_dom 531 600
IPR003128 Villin_headpiece 913 948
No external refs found!