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  5. Solyc04g008680.4.1

Solyc04g008680.4.1 (emb1579, Solyc04g008680)


Aliases : emb1579, Solyc04g008680

Description : no description available(sp|f4is91|rsa1_arath : 275.0)


Gene families : OG0003544 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003544_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g008680.4.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00266660 emb1579,... No description available 0.05 OrthoFinder output from all 47 species
AT2G03150 emb1579 ATP/GTP-binding protein family 0.12 OrthoFinder output from all 47 species
Adi_g010843 emb1579 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g47806 emb1579 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g38938 emb1579 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12039 emb1579 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g21996 emb1579 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0045.g029908 emb1579 not classified & original description: CDS=223-3273 0.04 OrthoFinder output from all 47 species
Ceric.12G096000.1 emb1579, Ceric.12G096000 not classified & original description: pacid=50600642... 0.03 OrthoFinder output from all 47 species
Cre06.g283634 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g17106 emb1579 not classified & original description: none 0.1 OrthoFinder output from all 47 species
Ehy_g07959 emb1579 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01019950001 emb1579 No description available 0.08 OrthoFinder output from all 47 species
Len_g14277 emb1579 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g16958 emb1579 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Mp7g18160.1 emb1579 no description available(sp|f4is91|rsa1_arath : 184.0) 0.05 OrthoFinder output from all 47 species
Ore_g13779 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02395 emb1579 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo443360 emb1579 No description available 0.08 OrthoFinder output from all 47 species
Spa_g30417 emb1579 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g21695 emb1579 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e030655_P003 emb1579, Zm00001e030655 no description available(sp|f4is91|rsa1_arath : 304.0) 0.17 OrthoFinder output from all 47 species
Zm00001e037178_P001 emb1579, Zm00001e037178 no description available(sp|f4is91|rsa1_arath : 313.0) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR025954 DBC1/CARP1_inactive_NUDIX_dom 502 619
No external refs found!