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  5. Solyc04g008410.3.1

Solyc04g008410.3.1 (Solyc04g008410)


Aliases : Solyc04g008410

Description : Pentatricopeptide repeat-containing protein At1g03100, mitochondrial OS=Arabidopsis thaliana (sp|q9sa60|ppr6_arath : 927.0)


Gene families : OG0001501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g008410.3.1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00272000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.03 OrthoFinder output from all 47 species
AMTR_s00019p00220910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.03 OrthoFinder output from all 47 species
AT1G03100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G68980 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G69290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from all 47 species
Adi_g067157 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g116058 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g28648 CRM3, HCF152 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.01G012400.1 Ceric.01G012400 not classified & original description: pacid=50592360... 0.03 OrthoFinder output from all 47 species
Ceric.01G123400.1 Ceric.01G123400 not classified & original description: pacid=50591208... 0.02 OrthoFinder output from all 47 species
Dac_g09169 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g04085 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g09114 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_34245 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.03 OrthoFinder output from all 47 species
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.04 OrthoFinder output from all 47 species
MA_113202g0010 OTP86 Pentatricopeptide repeat-containing protein At3g09040,... 0.04 OrthoFinder output from all 47 species
MA_46631g0010 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.03 OrthoFinder output from all 47 species
MA_743669g0010 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.03 OrthoFinder output from all 47 species
MA_90791g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0059.g015033 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.03 OrthoFinder output from all 47 species
Solyc01g088750.3.1 Solyc01g088750 Pentatricopeptide repeat-containing protein At1g69290... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 623 668
IPR002885 Pentatricopeptide_repeat 536 581
IPR002885 Pentatricopeptide_repeat 486 511
IPR002885 Pentatricopeptide_repeat 325 351
No external refs found!