Solyc04g005640.3.1 (Solyc04g005640)

Aliases : Solyc04g005640

Description : Intracellular ribonuclease LX OS=Solanum lycopersicum (sp|p80196|rnlx_sollc : 257.0)

Gene families : OG0001771 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001771_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g005640.3.1
Cluster	HCCA: Cluster_82

Target	Alias	Description	ECC score	Gene Family Method
Aop_g15509	No alias	T2-type RNase *(RNS) & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene37250.t1	Aspi01Gene37250	T2-type RNase *(RNS) & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g08595	ATRNS1, RNS1	T2-type RNase *(RNS) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01010088001	No alias	Extracellular ribonuclease LE OS=Solanum lycopersicum	0.04	OrthoFinder output from all 47 species
Gb_27893	ATRNS1, RNS1	Ribonuclease 1 OS=Arabidopsis thaliana...	0.06	OrthoFinder output from all 47 species
Gb_30835	ATRNS1, RNS1	Ribonuclease 1 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Gb_30836	ATRNS1, RNS1	Ribonuclease 1 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
LOC_Os01g67190.1	RNS2, LOC_Os01g67190	Ribonuclease 2 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
LOC_Os07g43670.1	ATRNS1, RNS1,...	Ribonuclease 1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
LOC_Os09g36700.1	LOC_Os09g36700	Ribonuclease 1 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
MA_10433186g0010	ATRNS1, RNS1	Ribonuclease 1 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Mp2g08570.1	ATRNS1, RNS1	Ribonuclease 1 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Smo407198	No alias	No description available	0.02	OrthoFinder output from all 47 species
Solyc05g007950.4.1	ATRNS1, RNS1,...	Extracellular ribonuclease LE OS=Solanum lycopersicum...	0.03	OrthoFinder output from all 47 species
Solyc07g006560.3.1	Solyc07g006560	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016849	phosphorus-oxygen lyase activity	None	Extended
MF	GO:0033897	ribonuclease T2 activity	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004857	enzyme inhibitor activity	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
MF	GO:0008131	primary amine oxidase activity	IEP	HCCA
BP	GO:0009308	amine metabolic process	IEP	HCCA
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015297	antiporter activity	IEP	HCCA
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	HCCA
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	HCCA
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
MF	GO:0030599	pectinesterase activity	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
MF	GO:0048038	quinone binding	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001568	RNase_T2-like	25	208

External Links

No external refs found!

Solyc04g005640.3.1 (Solyc04g005640)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation