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  5. Solyc03g115140.4.1

Solyc03g115140.4.1 (Solyc03g115140)


Aliases : Solyc03g115140

Description : co-chaperone (Jjj1)


Gene families : OG0005255 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005255_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g115140.4.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AT1G74250 No alias DNAJ heat shock N-terminal domain-containing protein 0.08 OrthoFinder output from all 47 species
Adi_g007036 No alias co-chaperone *(Jjj1) & original description: none 0.03 OrthoFinder output from all 47 species
Cre05.g240650 No alias DNAJ protein JJJ1 homolog OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dcu_g01735 No alias co-chaperone *(Jjj1) & original description: none 0.05 OrthoFinder output from all 47 species
LOC_Os12g31840.1 LOC_Os12g31840 co-chaperone (Jjj1) 0.1 OrthoFinder output from all 47 species
Nbi_g06716 No alias co-chaperone *(Jjj1) & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g20878 No alias co-chaperone *(Jjj1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15738 No alias co-chaperone *(Jjj1) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g50568 No alias co-chaperone *(Jjj1) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e039593_P002 Zm00001e039593 co-chaperone (Jjj1) 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001623 DnaJ_domain 10 75
IPR022755 Znf_C2H2_jaz 300 325
No external refs found!