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  5. Solyc03g114240.4.1

Solyc03g114240.4.1 (PG2, Solyc03g114240)


Aliases : PG2, Solyc03g114240

Description : non-catalytic polygalacturonase regulator


Gene families : OG0000218 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000218_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g114240.4.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00087p00102660 evm_27.TU.AmTr_v1... BURP domain-containing protein BNM2A OS=Brassica napus 0.03 OrthoFinder output from all 47 species
AT5G25610 ATRD22, RD22 BURP domain-containing protein 0.04 OrthoFinder output from all 47 species
Aev_g09495 PG2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g04221 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16014 PG1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g06653 ATRD22, RD22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60144.t1 Aspi01Gene60144 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g14519 PG1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007771001 PG2 Cell wall.pectin.modification and... 0.07 OrthoFinder output from all 47 species
Gb_01410 JP630, PG3 non-catalytic polygalacturonase regulator 0.03 OrthoFinder output from all 47 species
LOC_Os05g12640.1 LOC_Os05g12640 BURP domain-containing protein 2 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
MA_19057g0010 JP630, PG3 non-catalytic polygalacturonase regulator 0.04 OrthoFinder output from all 47 species
Nbi_g29071 PG2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g32074 ATRD22, RD22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g14752 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0009.g004310 JP630, PG3 not classified & original description: CDS=43-1077 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011800 ATRD22, RD22 not classified & original description: CDS=1-1551 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR004873 BURP_dom 421 633
No external refs found!