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  5. Solyc03g082890.3.1

Solyc03g082890.3.1 (Solyc03g082890)


Aliases : Solyc03g082890

Description : Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis thaliana (sp|p81760|tl17_arath : 289.0)


Gene families : OG0007246 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007246_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g082890.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00263380 evm_27.TU.AmTr_v1... Thylakoid lumenal 17.4 kDa protein, chloroplastic... 0.03 OrthoFinder output from all 47 species
Ala_g00689 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g03533 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g01060 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g01083 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0242.g059851 No alias not classified & original description: CDS=79-1149 0.04 OrthoFinder output from all 47 species
Cba_g08319 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ceric.38G025800.1 Ceric.38G025800 not classified & original description: pacid=50579324... 0.11 OrthoFinder output from all 47 species
Dac_g02073 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g17850 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Dde_g16670 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Ehy_g16556 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01038586001 No alias Thylakoid lumenal 17.4 kDa protein, chloroplastic... 0.07 OrthoFinder output from all 47 species
Gb_09516 No alias Thylakoid lumenal 17.4 kDa protein, chloroplastic... 0.06 OrthoFinder output from all 47 species
LOC_Os10g35810.1 LOC_Os10g35810 Thylakoid lumenal 17.4 kDa protein, chloroplastic... 0.08 OrthoFinder output from all 47 species
Len_g04136 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp1g10990.1 No alias Thylakoid lumenal 17.4 kDa protein, chloroplastic... 0.05 OrthoFinder output from all 47 species
Msp_g00295 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Nbi_g12697 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g37297 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g37298 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Pir_g57312 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32727 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015268 No alias not classified & original description: CDS=42-668 0.03 OrthoFinder output from all 47 species
Sam_g08902 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g53789 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g03066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
MF GO:0051920 peroxiredoxin activity IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001646 5peptide_repeat 166 205
IPR001646 5peptide_repeat 120 149
No external refs found!