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Aliases : AT59, Solyc03g058910
Description : pectate lyase
Gene families : OG0000492 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000492_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00004p00123190 | evm_27.TU.AmTr_v1... | Cell wall.pectin.modification and degradation.pectate lyase | 0.09 | OrthoFinder output from all 47 species | |
| AMTR_s00078p00106380 | evm_27.TU.AmTr_v1... | Cell wall.pectin.modification and degradation.pectate lyase | 0.15 | OrthoFinder output from all 47 species | |
| AT1G04680 | No alias | Pectin lyase-like superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| AT1G14420 | AT59 | Pectate lyase family protein | 0.11 | OrthoFinder output from all 47 species | |
| AT1G67750 | No alias | Pectate lyase family protein | 0.04 | OrthoFinder output from all 47 species | |
| AT2G02720 | No alias | Pectate lyase family protein | 0.15 | OrthoFinder output from all 47 species | |
| AT3G01270 | No alias | Pectate lyase family protein | 0.08 | OrthoFinder output from all 47 species | |
| AT3G24230 | No alias | Pectate lyase family protein | 0.03 | OrthoFinder output from all 47 species | |
| AT3G24670 | No alias | Pectin lyase-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT5G04310 | No alias | Pectin lyase-like superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT5G09280 | No alias | Pectin lyase-like superfamily protein | 0.06 | OrthoFinder output from all 47 species | |
| AT5G15110 | No alias | Pectate lyase family protein | 0.13 | OrthoFinder output from all 47 species | |
| Aop_g13674 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene17935.t1 | Aspi01Gene17935 | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0168.g054627 | No alias | EC_4.2 carbon-oxygen lyase & original description: CDS=18-1145 | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.30G051100.1 | RHS14, Ceric.30G051100 | EC_4.2 carbon-oxygen lyase & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.30G051200.1 | RHS14, Ceric.30G051200 | EC_4.2 carbon-oxygen lyase & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g11741 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g12057 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g39421 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g46389 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g03656 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g05863 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g15970 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g31050 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01000592001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01008053001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.13 | OrthoFinder output from all 47 species | |
| GSVIVT01011348001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.11 | OrthoFinder output from all 47 species | |
| GSVIVT01020067001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.13 | OrthoFinder output from all 47 species | |
| GSVIVT01020068001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.14 | OrthoFinder output from all 47 species | |
| GSVIVT01029048001 | No alias | Cell wall.pectin.modification and degradation.pectate lyase | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os02g12300.1 | AT59, LOC_Os02g12300 | pectate lyase | 0.1 | OrthoFinder output from all 47 species | |
| LOC_Os04g05050.1 | LOC_Os04g05050 | pectate lyase | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os06g05209.1 | LOC_Os06g05209 | pectate lyase | 0.12 | OrthoFinder output from all 47 species | |
| LOC_Os06g05260.1 | LOC_Os06g05260 | pectate lyase | 0.14 | OrthoFinder output from all 47 species | |
| LOC_Os06g38510.2 | LOC_Os06g38510 | pectate lyase | 0.06 | OrthoFinder output from all 47 species | |
| Len_g13617 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g50589 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_103716g0010 | No alias | pectate lyase | 0.04 | OrthoFinder output from all 47 species | |
| MA_66914g0010 | No alias | pectate lyase | 0.03 | OrthoFinder output from all 47 species | |
| MA_928735g0010 | No alias | pectate lyase | 0.01 | OrthoFinder output from all 47 species | |
| Mp8g00770.1 | No alias | pectate lyase | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g26214 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g26215 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g28391 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g41164 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g41165 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0169.g024310 | No alias | EC_4.2 carbon-oxygen lyase & original description: CDS=172-1407 | 0.03 | OrthoFinder output from all 47 species | |
| Solyc03g113150.3.1 | AT59, Solyc03g113150 | pectate lyase | 0.04 | OrthoFinder output from all 47 species | |
| Solyc06g071020.3.1 | Solyc06g071020 | pectate lyase | 0.07 | OrthoFinder output from all 47 species | |
| Spa_g40115 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g07683 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g09317 | No alias | EC_4.2 carbon-oxygen lyase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e024959_P001 | AT59, Zm00001e024959 | pectate lyase | 0.11 | OrthoFinder output from all 47 species | |
| Zm00001e037311_P001 | Zm00001e037311 | pectate lyase | 0.12 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | IEP | HCCA |
| MF | GO:0004650 | polygalacturonase activity | IEP | HCCA |
| MF | GO:0004857 | enzyme inhibitor activity | IEP | HCCA |
| MF | GO:0005215 | transporter activity | IEP | HCCA |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | HCCA |
| BP | GO:0006810 | transport | IEP | HCCA |
| BP | GO:0006811 | monoatomic ion transport | IEP | HCCA |
| BP | GO:0006812 | monoatomic cation transport | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| MF | GO:0015095 | magnesium ion transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015299 | obsolete solute:proton antiporter activity | IEP | HCCA |
| BP | GO:0015693 | magnesium ion transport | IEP | HCCA |
| BP | GO:0016043 | cellular component organization | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0016788 | hydrolase activity, acting on ester bonds | IEP | HCCA |
| MF | GO:0016798 | hydrolase activity, acting on glycosyl bonds | IEP | HCCA |
| MF | GO:0016829 | lyase activity | IEP | HCCA |
| MF | GO:0016835 | carbon-oxygen lyase activity | IEP | HCCA |
| MF | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides | IEP | HCCA |
| MF | GO:0022857 | transmembrane transporter activity | IEP | HCCA |
| MF | GO:0030234 | enzyme regulator activity | IEP | HCCA |
| MF | GO:0030570 | pectate lyase activity | IEP | HCCA |
| MF | GO:0030599 | pectinesterase activity | IEP | HCCA |
| BP | GO:0042545 | cell wall modification | IEP | HCCA |
| BP | GO:0045229 | external encapsulating structure organization | IEP | HCCA |
| MF | GO:0046873 | metal ion transmembrane transporter activity | IEP | HCCA |
| BP | GO:0051179 | localization | IEP | HCCA |
| BP | GO:0051234 | establishment of localization | IEP | HCCA |
| MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | HCCA |
| BP | GO:0055085 | transmembrane transport | IEP | HCCA |
| BP | GO:0071554 | cell wall organization or biogenesis | IEP | HCCA |
| BP | GO:0071555 | cell wall organization | IEP | HCCA |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
| MF | GO:0098772 | molecular function regulator activity | IEP | HCCA |
| MF | GO:0140678 | molecular function inhibitor activity | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002022 | Pec_lyase | 130 | 312 |
| No external refs found! |