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  5. Solyc03g005750.3.1

Solyc03g005750.3.1 (Solyc03g005750)


Aliases : Solyc03g005750

Description : no hits & (original description: none)


Gene families : OG0000712 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000712_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g005750.3.1
Cluster HCCA: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Adi_g053981 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g061004 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g087204 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g115713 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g120900 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g129391 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g05517 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15111 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11714 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene12159.t2 Aspi01Gene12159 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0003.g007708 No alias not classified & original description: CDS=120-2903 0.03 OrthoFinder output from all 47 species
Azfi_s1286.g100941 No alias not classified & original description: CDS=94-837 0.02 OrthoFinder output from all 47 species
Cba_g15326 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.02G033400.1 Ceric.02G033400 not classified & original description: pacid=50584302... 0.03 OrthoFinder output from all 47 species
Ceric.29G083800.1 Ceric.29G083800 not classified & original description: pacid=50624429... 0.05 OrthoFinder output from all 47 species
Dcu_g15160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19941 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01021389001 No alias No description available 0.07 OrthoFinder output from all 47 species
GSVIVT01030121001 No alias GBF-interacting protein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os09g08670.1 LOC_Os09g08670 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Lfl_g03459 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g15622 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_137710g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp4g06750.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g13051 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g17436 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g28851 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0181.g024848 No alias not classified & original description: CDS=93-2615 0.03 OrthoFinder output from all 47 species
Sam_g10558 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g13683 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14569 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g14041 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e020237_P001 Zm00001e020237 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e026550_P001 Zm00001e026550 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e032451_P001 Zm00001e032451 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0043085 positive regulation of catalytic activity IEP HCCA
BP GO:0044093 positive regulation of molecular function IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0110154 RNA decapping IEP HCCA
BP GO:0110156 methylguanosine-cap decapping IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR009719 GIP1_N 21 79
No external refs found!