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Aliases : LINC1, Solyc02g089800
Description : CRWN nuclear lamina lamin-like protein
Gene families : OG0002096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002096_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc02g089800.3.1 | |
| Cluster | HCCA: Cluster_74 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00024p00252300 | LINC1,... | Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00044p00204550 | LINC4,... | Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... | 0.04 | OrthoFinder output from all 47 species | |
| AT1G13220 | LINC2 | nuclear matrix constituent protein-related | 0.03 | OrthoFinder output from all 47 species | |
| AT1G67230 | LINC1 | little nuclei1 | 0.03 | OrthoFinder output from all 47 species | |
| AT1G68790 | LINC3 | little nuclei3 | 0.1 | OrthoFinder output from all 47 species | |
| AT5G65770 | LINC4 | little nuclei4 | 0.06 | OrthoFinder output from all 47 species | |
| AT5G65780 | ATBCAT-5 | branched-chain amino acid aminotransferase 5 /... | 0.07 | OrthoFinder output from all 47 species | |
| Adi_g055294 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g08422 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g07969 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g72039 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.31G070800.1 | LINC2, Ceric.31G070800 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.1 | OrthoFinder output from all 47 species | |
| Ehy_g13504 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01011972001 | LINC3 | Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01031076001 | LINC1 | Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... | 0.07 | OrthoFinder output from all 47 species | |
| Gb_03736 | LINC2 | CRWN nuclear lamina lamin-like protein | 0.05 | OrthoFinder output from all 47 species | |
| Gb_20952 | LINC4 | CRWN nuclear lamina lamin-like protein | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os01g56140.1 | LINC4, LOC_Os01g56140 | CRWN nuclear lamina lamin-like protein | 0.09 | OrthoFinder output from all 47 species | |
| LOC_Os02g48010.1 | LINC1, LOC_Os02g48010 | CRWN nuclear lamina lamin-like protein | 0.12 | OrthoFinder output from all 47 species | |
| Lfl_g03466 | LINC3 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g11685 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g19012 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g19679 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g28255 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g14580 | No alias | nuclear lamina lamin-like protein *(CRWN) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Spa_g26205 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g05667 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e019705_P002 | LINC4, Zm00001e019705 | CRWN nuclear lamina lamin-like protein | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e023357_P001 | LINC1, Zm00001e023357 | CRWN nuclear lamina lamin-like protein | 0.14 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
| MF | GO:0003682 | chromatin binding | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0008380 | RNA splicing | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |