Solyc02g083560.3.1 (ZIP3, VPS35A, Solyc02g083560)

Aliases : ZIP3, VPS35A, Solyc02g083560

Description : component VPS35 of Retromer protein recycling complex

Gene families : OG0003496 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003496_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g083560.3.1
Cluster	HCCA: Cluster_33

Target	Alias	Description	ECC score	Gene Family Method
AT2G17790	ZIP3, VPS35A	VPS35 homolog A	0.05	OrthoFinder output from all 47 species
AT3G51310	VPS35C	VPS35 homolog C	0.04	OrthoFinder output from all 47 species
Adi_g011699	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.04	OrthoFinder output from all 47 species
Adi_g069104	ZIP3, VPS35A	component *(VPS35) of Retromer protein recycling complex...	0.02	OrthoFinder output from all 47 species
Aev_g16183	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.09	OrthoFinder output from all 47 species
Ala_g07415	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.05	OrthoFinder output from all 47 species
Aob_g02341	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.03	OrthoFinder output from all 47 species
Ceric.32G026000.1	VPS35B, Ceric.32G026000	component *(VPS35) of Retromer protein recycling complex...	0.1	OrthoFinder output from all 47 species
Cre01.g029650	ZIP3, VPS35A	Vesicle trafficking.endomembrane trafficking.protein...	0.05	OrthoFinder output from all 47 species
Dcu_g44008	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.1	OrthoFinder output from all 47 species
Dde_g10908	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.02	OrthoFinder output from all 47 species
GSVIVT01009948001	VPS35B	Vesicle trafficking.endomembrane trafficking.protein...	0.07	OrthoFinder output from all 47 species
Gb_38584	VPS35B	component VPS35 of Retromer protein recycling complex	0.06	OrthoFinder output from all 47 species
LOC_Os03g58700.1	VPS35B, LOC_Os03g58700	component VPS35 of Retromer protein recycling complex	0.1	OrthoFinder output from all 47 species
Lfl_g08397	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.11	OrthoFinder output from all 47 species
MA_9038g0010	ZIP3, VPS35A	component VPS35 of Retromer protein recycling complex	0.03	OrthoFinder output from all 47 species
MA_9038g0020	ZIP3, VPS35A	component VPS35 of Retromer protein recycling complex	0.03	OrthoFinder output from all 47 species
Msp_g00699	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.03	OrthoFinder output from all 47 species
Nbi_g11981	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.04	OrthoFinder output from all 47 species
Ore_g08613	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.02	OrthoFinder output from all 47 species
Pir_g10880	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.02	OrthoFinder output from all 47 species
Ppi_g04632	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.03	OrthoFinder output from all 47 species
Sam_g29536	No alias	component *(VPS35) of Retromer protein recycling complex...	0.04	OrthoFinder output from all 47 species
Spa_g15075	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.03	OrthoFinder output from all 47 species
Tin_g02135	VPS35B	component *(VPS35) of Retromer protein recycling complex...	0.05	OrthoFinder output from all 47 species
Zm00001e006031_P002	VPS35B, Zm00001e006031	component VPS35 of Retromer protein recycling complex	0.14	OrthoFinder output from all 47 species
Zm00001e011849_P003	VPS35B, Zm00001e011849	component VPS35 of Retromer protein recycling complex	0.17	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	IEA	Interproscan
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016197	endosomal transport	None	Extended
BP	GO:0016482	cytosolic transport	None	Extended
CC	GO:0030906	retromer, cargo-selective complex	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0042147	retrograde transport, endosome to Golgi	IEA	Interproscan
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003714	transcription corepressor activity	IEP	HCCA
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
MF	GO:0005096	GTPase activator activity	IEP	HCCA
CC	GO:0005789	endoplasmic reticulum membrane	IEP	HCCA
CC	GO:0005801	cis-Golgi network	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006497	protein lipidation	IEP	HCCA
BP	GO:0006505	GPI anchor metabolic process	IEP	HCCA
BP	GO:0006506	GPI anchor biosynthetic process	IEP	HCCA
BP	GO:0006643	membrane lipid metabolic process	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	HCCA
BP	GO:0006664	glycolipid metabolic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007030	Golgi organization	IEP	HCCA
MF	GO:0008047	enzyme activator activity	IEP	HCCA
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
BP	GO:0009247	glycolipid biosynthetic process	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
BP	GO:0046467	membrane lipid biosynthetic process	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA
BP	GO:1903509	liposaccharide metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005378	Vps35	12	747

External Links

No external refs found!

Solyc02g083560.3.1 (ZIP3, VPS35A, Solyc02g083560)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation