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  5. Solyc02g082130.2.1

Solyc02g082130.2.1 (Solyc02g082130)


Aliases : Solyc02g082130

Description : no hits & (original description: none)


Gene families : OG0005917 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005917_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g082130.2.1
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00146p00077020 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT5G05210 No alias Surfeit locus protein 6 0.09 OrthoFinder output from all 47 species
Azfi_s0094.g043392 No alias not classified & original description: CDS=70-1104 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020538.70 No alias No description available 0.04 OrthoFinder output from all 47 species
Cre02.g082300 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os05g30880.1 LOC_Os05g30880 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Mp2g16210.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g07436 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e015191_P001 Zm00001e015191 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043486 obsolete histone exchange IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR029190 Rrp14/SURF6_C 161 331
IPR029188 Rrp14_N 33 92
No external refs found!