1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc02g081940.3.1

Solyc02g081940.3.1 (Solyc02g081940)


Aliases : Solyc02g081940

Description : no hits & (original description: none)


Gene families : OG0005880 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005880_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g081940.3.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g104494 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.28G030000.1 Ceric.28G030000 not classified & original description: pacid=50570416... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000893.5 No alias No description available 0.06 OrthoFinder output from all 47 species
Cre16.g685200 No alias No description available 0.06 OrthoFinder output from all 47 species
Dcu_g40735 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01012163001 No alias Polyadenylate-binding protein 2 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
LOC_Os04g52200.1 LOC_Os04g52200 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Lfl_g16585 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g29938 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14275 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26392 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g15174 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e041627_P001 Zm00001e041627 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e042214_P001 Zm00001e042214 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004526 ribonuclease P activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004549 tRNA-specific ribonuclease activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 500 563
IPR000504 RRM_dom 304 374
IPR000504 RRM_dom 617 691
IPR000504 RRM_dom 4 71
IPR000504 RRM_dom 716 783
No external refs found!