1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc02g081120.4.1

Solyc02g081120.4.1 (BUM1, SHL, STM, WAM,...)


Aliases : BUM1, SHL, STM, WAM, WAM1, BUM, Solyc02g081120

Description : transcription factor (KNOX)


Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc02g081120.4.1
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00026p00162850 KNAT3,... RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
AMTR_s00045p00169620 KNAT6, KNAT6L,... RNA biosynthesis.transcriptional activation.HB... 0.05 OrthoFinder output from all 47 species
AT1G62360 BUM1, SHL, STM,... KNOX/ELK homeobox transcription factor 0.04 OrthoFinder output from all 47 species
AT1G70510 KNAT2, ATK1 KNOTTED-like from Arabidopsis thaliana 2 0.1 OrthoFinder output from all 47 species
AT4G08150 BP, BP1, KNAT1 KNOTTED-like from Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT5G25220 KNAT3 KNOTTED1-like homeobox gene 3 0.03 OrthoFinder output from all 47 species
Adi_g017500 KNAT3 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g019966 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g045924 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g048010 BP, BP1, KNAT1 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058539 KNAT6, KNAT6L, KNAT6S KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g060986 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g085793 BUM1, SHL, STM,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107007 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g13164 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g05964 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g21136 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g15588 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22220 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g31169 KNAT5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g27530 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene56442.t2 KNAT3, Aspi01Gene56442 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene63424.t1 KNAT3, Aspi01Gene63424 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene63545.t1 BP, BP1, KNAT1,... KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0001.g000431 KNAT7, IXR11 KNOX-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g009595 BUM1, SHL, STM,... KNOX-type transcription factor & original description: CDS=1-1050 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010296 KNAT3 KNOX-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Azfi_s0022.g016023 KNAT6, KNAT6L, KNAT6S not classified & original description: CDS=247-1020 0.04 OrthoFinder output from all 47 species
Azfi_s0350.g066569 BUM1, SHL, STM,... KNOX-type transcription factor & original description: CDS=1-1488 0.03 OrthoFinder output from all 47 species
Azfi_s0637.g080498 KNAT4 KNOX-type transcription factor & original description: CDS=1-810 0.03 OrthoFinder output from all 47 species
Cba_g09026 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G064800.1 BUM1, SHL, STM,... KNOX-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.20G046300.1 BUM1, SHL, STM,... KNOX-type transcription factor & original description:... 0.07 OrthoFinder output from all 47 species
Dac_g03334 KNAT3 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g27227 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g03972 BP, BP1, KNAT1 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01004811001 BUM1, SHL, STM,... RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
GSVIVT01007715001 KNAT6, KNAT6L, KNAT6S RNA biosynthesis.transcriptional activation.HB... 0.08 OrthoFinder output from all 47 species
GSVIVT01013790001 KNAT6, KNAT6L, KNAT6S RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
GSVIVT01018257001 KNAT6, KNAT6L, KNAT6S RNA biosynthesis.transcriptional activation.HB... 0.05 OrthoFinder output from all 47 species
GSVIVT01030488001 BUM1, SHL, STM,... RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
LOC_Os01g19694.1 KNAT6, KNAT6L,... transcription factor (KNOX) 0.11 OrthoFinder output from all 47 species
LOC_Os03g47016.1 BP, BP1, KNAT1,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
LOC_Os03g51690.2 BP, BP1, KNAT1,... transcription factor (KNOX) 0.13 OrthoFinder output from all 47 species
LOC_Os03g51710.1 BP, BP1, KNAT1,... transcription factor (KNOX) 0.06 OrthoFinder output from all 47 species
LOC_Os03g56140.1 BP, BP1, KNAT1,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
LOC_Os05g03884.1 KNAT6, KNAT6L,... transcription factor (KNOX) 0.07 OrthoFinder output from all 47 species
LOC_Os08g19650.1 KNAT3, LOC_Os08g19650 transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Len_g00731 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g50763 KNAT3 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06541 BP, BP1, KNAT1 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12242 KNAT3 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_3582g0010 KNAT3 transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Msp_g06929 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19225 KNAT3 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25139 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g25497 KNAT4 KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g35975 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g36039 KNAT4 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g25018 KNAT6, KNAT6L, KNAT6S KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g30353 BP, BP1, KNAT1 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g02102 KNAT3 KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g07327 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g18663 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c18_18720V3.1 BUM1, SHL, STM,... KNOTTED-like from Arabidopsis thaliana 2 0.01 OrthoFinder output from all 47 species
Pp3c18_18750V3.1 Pp3c18_18750 KNOTTED1-like homeobox gene 6 0.02 OrthoFinder output from all 47 species
Pp3c19_5610V3.1 Pp3c19_5610 No annotation 0.02 OrthoFinder output from all 47 species
Pp3c21_10320V3.1 BUM1, SHL, STM,... KNOTTED-like from Arabidopsis thaliana 2 0.02 OrthoFinder output from all 47 species
Ppi_g10499 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005308 BUM1, SHL, STM,... KNOX-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007633 KNAT7, IXR11 not classified & original description: CDS=1-1266 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0115.g020964 BUM1, SHL, STM,... KNOX-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0142.g022803 No alias not classified & original description: CDS=20-451 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0250.g026749 KNAT3 not classified & original description: CDS=1-780 0.04 OrthoFinder output from all 47 species
Sam_g01264 No alias KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g23106 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g27266 No alias KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36645 No alias KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g47381 No alias KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc12g010410.3.1 KNAT4, Solyc12g010410 transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Spa_g56194 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45614 KNAT4 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005170_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.04 OrthoFinder output from all 47 species
Zm00001e005545_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.04 OrthoFinder output from all 47 species
Zm00001e005547_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Zm00001e011538_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.08 OrthoFinder output from all 47 species
Zm00001e017489_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.07 OrthoFinder output from all 47 species
Zm00001e027562_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.09 OrthoFinder output from all 47 species
Zm00001e029453_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.04 OrthoFinder output from all 47 species
Zm00001e032761_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.04 OrthoFinder output from all 47 species
Zm00001e039044_P001 KNAT7, IXR11,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR005540 KNOX1 95 134
IPR005541 KNOX2 150 196
IPR008422 Homeobox_KN_domain 276 315
IPR005539 ELK_dom 236 257
No external refs found!