Aliases : AT-TCP20, TCP20, PCF1, ATTCP20, Solyc02g068200
Description : transcription factor (TCP). TCP20 circadian clock activation factor
Gene families : OG0000443 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000443_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00029p00040760 | evm_27.TU.AmTr_v1... | Multi-process regulation.circadian clock.morning element... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00069p00171910 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.TCP... | 0.02 | OrthoFinder output from all 47 species | |
Adi_g040106 | AtTCP14, TCP14 | circAdian clock activation factor *(TCP20) & original... | 0.02 | OrthoFinder output from all 47 species | |
Adi_g069116 | AtTCP14, TCP14 | TCP-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g15454 | No alias | TCP-type transcription factor & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Cba_g45072 | AT-TCP20, TCP20,... | TCP-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pir_g50317 | AtTCP14, TCP14 | TCP-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pnu_g06948 | AT-TCP20, TCP20,... | circadian clock activation factor *(TCP20) & original... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e023066_P001 | Zm00001e023066 | transcription factor (TCP). CHE circadian clock repression factor | 0.01 | OrthoFinder output from all 47 species | |
Zm00001e036117_P001 | AtTCP14, TCP14,... | transcription factor (TCP) | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
MF | GO:0003924 | GTPase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
MF | GO:0005525 | GTP binding | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0008380 | RNA splicing | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
MF | GO:0016462 | pyrophosphatase activity | IEP | HCCA |
MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
MF | GO:0017111 | ribonucleoside triphosphate phosphatase activity | IEP | HCCA |
MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | HCCA |
MF | GO:0031072 | heat shock protein binding | IEP | HCCA |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
CC | GO:0046540 | U4/U6 x U5 tri-snRNP complex | IEP | HCCA |
MF | GO:0051082 | unfolded protein binding | IEP | HCCA |
CC | GO:0097525 | spliceosomal snRNP complex | IEP | HCCA |
CC | GO:0097526 | spliceosomal tri-snRNP complex | IEP | HCCA |
CC | GO:0120114 | Sm-like protein family complex | IEP | HCCA |
CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR017887 | TF_TCP_subgr | 36 | 141 |
No external refs found! |