Solyc02g022830.3.1 (Solyc02g022830)

Aliases : Solyc02g022830

Description : DNA primase and helicase (TWINKLE)

Gene families : OG0002154 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002154_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc02g022830.3.1
Cluster	HCCA: Cluster_81

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00032p00034370	evm_27.TU.AmTr_v1...	Cell cycle.organelle machineries.DNA replication.DNA...	0.03	OrthoFinder output from all 47 species
AT1G30680	No alias	toprim domain-containing protein	0.03	OrthoFinder output from all 47 species
Als_g07413	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g14823	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g09764	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g14570	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.1Z069600.1	Ceric.1Z069600	DNA primase and helicase *(TWINKLE) & original...	0.03	OrthoFinder output from all 47 species
Ceric.1Z212100.1	Ceric.1Z212100	not classified & original description: pacid=50582227...	0.02	OrthoFinder output from all 47 species
Ceric.1Z308100.1	Ceric.1Z308100	DNA primase and helicase *(TWINKLE) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01008778001	No alias	Cell cycle.organelle machineries.DNA replication.DNA...	0.06	OrthoFinder output from all 47 species
GSVIVT01021728001	No alias	Cell cycle.organelle machineries.DNA replication.DNA...	0.03	OrthoFinder output from all 47 species
LOC_Os06g45980.1	LOC_Os06g45980	DNA primase and helicase (TWINKLE)	0.05	OrthoFinder output from all 47 species
Len_g25718	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.06	OrthoFinder output from all 47 species
Lfl_g40449	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.04	OrthoFinder output from all 47 species
Mp7g12970.1	No alias	DNA primase and helicase (TWINKLE)	0.02	OrthoFinder output from all 47 species
Ore_g22672	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g40063	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g11494	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g08851	No alias	DNA primase and helicase *(TWINKLE) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e030349_P002	Zm00001e030349	DNA primase and helicase (TWINKLE)	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003909	DNA ligase activity	IEP	HCCA
MF	GO:0003910	DNA ligase (ATP) activity	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	HCCA
MF	GO:0017150	tRNA dihydrouridine synthase activity	IEP	HCCA
MF	GO:0019842	vitamin binding	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
MF	GO:0030170	pyridoxal phosphate binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
MF	GO:0070279	vitamin B6 binding	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
MF	GO:0106413	dihydrouridine synthase activity	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007694	DNA_helicase_DnaB-like_C	432	674
IPR006171	TOPRIM_domain	277	369

External Links

No external refs found!

Solyc02g022830.3.1 (Solyc02g022830)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation