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  5. Solyc01g111220.3.1

Solyc01g111220.3.1 (Solyc01g111220)


Aliases : Solyc01g111220

Description : Probable amidase At4g34880 OS=Arabidopsis thaliana (sp|a0a1p8b760|ami4g_arath : 529.0)


Gene families : OG0004248 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004248_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g111220.3.1
Cluster HCCA: Cluster_134

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00216070 evm_27.TU.AmTr_v1... Probable amidase At4g34880 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT4G34880 No alias Amidase family protein 0.03 OrthoFinder output from all 47 species
Dac_g26821 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024065001 No alias Probable amidase At4g34880 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01024069001 No alias Probable amidase At4g34880 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01024070001 No alias Probable amidase At4g34880 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os04g10460.1 LOC_Os04g10460 Probable amidase At4g34880 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
LOC_Os04g10530.1 LOC_Os04g10530 Probable amidase At4g34880 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os04g10569.1 LOC_Os04g10569 Probable amidase At4g34880 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0214.g025994 No alias not classified & original description: CDS=1-1410 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP HCCA
BP GO:0015977 carbon fixation IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
InterPro domains Description Start Stop
IPR023631 Amidase_dom 50 455
No external refs found!