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  5. Solyc01g104160.4.1

Solyc01g104160.4.1 (Solyc01g104160)


Aliases : Solyc01g104160

Description : no hits & (original description: none)


Gene families : OG0002396 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002396_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g104160.4.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00265440 evm_27.TU.AmTr_v1... Uncharacterized protein At1g10890 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Adi_g057267 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g29353 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g02409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_40204 No alias Uncharacterized protein At1g10890 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_120059g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_55673g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g10703 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e011186_P001 Zm00001e011186 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e014470_P001 Zm00001e014470 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e024181_P001 Zm00001e024181 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000469 cleavage involved in rRNA processing IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR033371 ARGLU1 126 280
No external refs found!