Solyc01g103960.3.1 (ATRECQ4A, ATSGS1,...)

Aliases : ATRECQ4A, ATSGS1, RECQ4A, Solyc01g103960

Description : helicase component RecQ4A of RTR Holliday junction dissolution complex

Gene families : OG0000844 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc01g103960.3.1

Target	Alias	Description	ECC score	Gene Family Method
Azfi_s0087.g042358	ATRECQ4A, ATSGS1, RECQ4A	helicase component *(RecQ4A) of RTR Holliday junction...	0.05	OrthoFinder output from all 47 species
Ceric.17G060200.1	ATRECQ4A,...	helicase component *(RecQ4A) of RTR Holliday junction...	0.04	OrthoFinder output from all 47 species
Ceric.34G005600.1	RECQI1, Ceric.34G005600	not classified & original description: pacid=50623064...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000615.26	RecQl3, ATRECQ3	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cre03.g178950	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Cre04.g219750	ATRECQ4A, ATSGS1, RECQ4A	Cell cycle.mitosis and meiosis.meiotic...	0.02	OrthoFinder output from all 47 species
GSVIVT01023325001	ATRECQ4A, ATSGS1, RECQ4A	Cell cycle.mitosis and meiosis.meiotic...	0.04	OrthoFinder output from all 47 species
Gb_08699	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.09	OrthoFinder output from all 47 species
LOC_Os04g35420.1	ATRECQ4A,...	helicase component RecQ4A of RTR Holliday junction...	0.07	OrthoFinder output from all 47 species
Len_g14718	ATRECQ4A, ATSGS1, RECQ4A	helicase component *(RecQ4A) of RTR Holliday junction...	0.05	OrthoFinder output from all 47 species
Len_g56734	RECQI1	not classified & original description: none	0.09	OrthoFinder output from all 47 species
MA_10435954g0010	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_10436537g0010	ATRECQ4A, ATSGS1, RECQ4A	helicase component RecQ4A of RTR Holliday junction...	0.05	OrthoFinder output from all 47 species
MA_361558g0010	ATRECQ4A, ATSGS1, RECQ4A	ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp4g14290.1	ATRECQ4A, ATSGS1, RECQ4A	helicase component RecQ4A of RTR Holliday junction...	0.05	OrthoFinder output from all 47 species
Mp4g16510.1	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Ore_g41299	RECQI1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g41947	MED34, ATRECQ2, RECQL2	component *(MED34) of MEDIATOR transcription...	0.02	OrthoFinder output from all 47 species
Smo98462	RECQI1	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003678	DNA helicase activity	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043138	3'-5' DNA helicase activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000796	condensin complex	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
BP	GO:0007076	mitotic chromosome condensation	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0030261	chromosome condensation	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR018982	RQC_domain	864	977
IPR002121	HRDC_dom	1024	1090
IPR011545	DEAD/DEAH_box_helicase_dom	452	620
IPR032284	RecQ_Zn-bd	775	857
IPR001650	Helicase_C	659	763

External Links

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Solyc01g103960.3.1 (ATRECQ4A, ATSGS1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation