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  5. Solyc01g102970.3.1

Solyc01g102970.3.1 (EMB140, Solyc01g102970)


Aliases : EMB140, Solyc01g102970

Description : no hits & (original description: none)


Gene families : OG0005015 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005015_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc01g102970.3.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00147110 EMB140,... No description available 0.04 OrthoFinder output from all 47 species
Adi_g061140 EMB140 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02511 EMB140 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g57460 EMB140 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g02313 EMB140 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000961 EMB140 not classified & original description: CDS=38-2449 0.04 OrthoFinder output from all 47 species
Ceric.36G050300.1 EMB140, Ceric.36G050300 not classified & original description: pacid=50568320... 0.03 OrthoFinder output from all 47 species
Cre12.g546700 EMB140 No description available 0.01 OrthoFinder output from all 47 species
LOC_Os08g02130.2 EMB140, LOC_Os08g02130 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Len_g23197 EMB140 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10232 EMB140 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10433949g0010 EMB140 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g42149 EMB140 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g44100 EMB140 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo402481 EMB140 No description available 0.03 OrthoFinder output from all 47 species
Zm00001e029180_P005 EMB140, Zm00001e029180 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004484 mRNA guanylyltransferase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006370 7-methylguanosine mRNA capping IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
MF GO:0031491 nucleosome binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 678 745
IPR008669 LSM_interact 840 855
No external refs found!